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Align VIMSS539764 to PF01933 (UPF0052)

VIMSS539764 has 342 amino acids

Query:       UPF0052  [M=293]
Accession:   PF01933.18
Description: Uncharacterised protein family UPF0052
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-74  235.9   0.0    3.6e-74  235.7   0.0    1.0  1  VIMSS539764  


Domain annotation for each sequence (and alignments):
>> VIMSS539764  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.7   0.0   3.6e-74   3.6e-74       1     274 [.       5     281 ..       5     297 .. 0.92

  Alignments for each domain:
  == domain 1  score: 235.7 bits;  conditional E-value: 3.6e-74
                  EEEEE-CHHHHHHHHHHCCSSCEEEEEE-----SHHHHHHHHHHTS---HHHHHHHHHH--S-C...HHHHHCH-B-SSSSSSTT-BHHHHHHHHHHH CS
      UPF0052   1 vvvlgGGtGlskllrglkevtaeltavvtvaDdggssGelrrelgllaigDirnvlvalidder...lleeLfqyRfkgdgdlaghslgnllLaalae 95 
                  +v+lgGG+Gl   l++ +++t+ +tavvtvaDdggssG+lr+el+++++gD+r  l+al+ d +   l++ ++q+Rf g+g lagh +gnl+La+l+e
  VIMSS539764   5 IVALGGGHGLYATLSAARRLTPYVTAVVTVADDGGSSGRLRSELDVVPPGDLRMALAALASDSPhgrLWATILQHRFGGSGVLAGHPIGNLMLAGLSE 102
                  8**********************************************************55555588******************************* PP

                  HHS-HHHHHHHHHHHTT-SSEEEES-SS--EEEEEETTS-E.......EESTTTGGGG-S...-EEEEEEESTT----HHHHHHHHH-SEEEE-SS-I CS
      UPF0052  96 ltgsleeaiealskilkvrgrvlPatddpvelsaeledGee.......itgeskisearklkapikrvflepegaeaapevleaikeAdlivlgpGsl 186
                  +  +  +a+++l +il+v+grvlP++   +++ a ++  e        i+g+ +i+++     +++rv l p+++ a++++++ai++Adl+vlgpGs+
  VIMSS539764 103 VLADPVAALDELGRILGVKGRVLPMCPVALQIEADVSGLEAdprmfrlIRGQVAIATTPG---KVRRVRLLPTDPPATRQAVDAIMAADLVVLGPGSW 197
                  ************************************544449999**9*******66666...9********************************** PP

                  IIIIHHHHTSCCHHHHHHH-SSEEEEE--SB--TTTSTT-BHHHHHHHHHHCH-SS....S-SEEEEE-S---HHHHHHHHTTT--B- CS
      UPF0052 187 ytSiiPiLlvpgiaealreskakkvlvsnimtqkGetdgfsvsdhvkaieravgkgvakayvdavlvntsevpeellekyaaegkepv 274
                  +tS+iP++lvpg+a+alr+++a++ lv+n++ ++Get gfsv++h++ + ++++ g     v +++++ ++vp+e  +++ ++ ++++
  VIMSS539764 198 FTSVIPHVLVPGLAAALRATSARRALVLNLVAEPGETAGFSVERHLHVLAQHAP-G---FTVHDIIIDAERVPSEREREQLRRTATML 281
                  ******************************************************.5...47999999999888877665555555544 PP



Or compare VIMSS539764 to CDD or PaperBLAST