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Align VIMSS7618210 to PF01933 (UPF0052)

VIMSS7618210 has 342 amino acids

Query:       UPF0052  [M=293]
Accession:   PF01933.18
Description: Uncharacterised protein family UPF0052
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     3e-100  321.3   0.7   3.5e-100  321.1   0.7    1.0  1  VIMSS7618210  


Domain annotation for each sequence (and alignments):
>> VIMSS7618210  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.1   0.7  3.5e-100  3.5e-100       1     292 [.      18     310 ..      18     311 .. 0.96

  Alignments for each domain:
  == domain 1  score: 321.1 bits;  conditional E-value: 3.5e-100
                   EEEEE-CHHHHHHHHHHCCSSCEEEEEE-----SHHHHHHHHHHTS---HHHHHHHHHH--S-CHHHHHCH-B-SS.SSSSTT-BHHHHHHHHHHHH CS
       UPF0052   1 vvvlgGGtGlskllrglkevtaeltavvtvaDdggssGelrrelgllaigDirnvlvalidderlleeLfqyRfkg.dgdlaghslgnllLaalael 96 
                   vvv+gGGtGl+ +l++l e  a++ta+vtvaDdggssG++r+ ++++++gDirnvlval++ ++l+ ++fqyRf++ d+ +agh++gnl++aal+e+
  VIMSS7618210  18 VVVIGGGTGLPVILHSLHEQDADVTAIVTVADDGGSSGKIRNYINVVPPGDIRNVLVALSELPSLYLDIFQYRFNTtDAFFAGHAIGNLIIAALSEM 114
                   8**************************************************************************9899****************** PP

                   HS-HHHHHHHHHHHTT-SSEEEES-SS--EEEEEETTS-EEESTTTGGGG-S...-EEEEEEESTT-.....---HHHHHHHHH-SEEEE-SS-III CS
       UPF0052  97 tgsleeaiealskilkvrgrvlPatddpvelsaeledGeeitgeskisearklkapikrvflepega.....eaapevleaikeAdlivlgpGslyt 188
                   +g +  a+++ls++++v+g+v+Pa+++p++l+ae++dG+ ++ge +i++a+k   +ik++ ++ +++     +a +ev++ai++Ad++vlgpGsl+t
  VIMSS7618210 115 KGGIFPAVQQLSEMMQVDGHVYPASNTPLTLNAEFTDGTRLSGEAEITAAGK---NIKHISVSETDPangepKAVQEVIDAIMDADVVVLGPGSLFT 208
                   ***********************************************99988...888888877777444445************************ PP

                   IIHHHHTSCCHHHHHHH-SSEEEEE--SB--TTTSTT-BHHHHHHHHHHCH-SS....S-SEEEEE-S---HHHHHHHHT.TT--B-B--H.HHHCT CS
       UPF0052 189 SiiPiLlvpgiaealreskakkvlvsnimtqkGetdgfsvsdhvkaieravgkgvakayvdavlvntsevpeellekyaa.egkepvelDa.klekl 283
                   Si+P+L++ ++++a++++ka++++++nimtqkGet++f+ +dhv+ +++++g++    +vd+vlvn ++vp+++l++++  e  +pv+++   l+++
  VIMSS7618210 209 SILPNLMIGNLGDAVKKTKAEVIYIVNIMTQKGETQNFTDADHVRVLNEQMGEN----FVDTVLVNIEPVPDNYLDHQKYnEILTPVKHNYqGLRDM 301
                   ****************************************************99....*****************999887999******88***** PP

                   T-EEEEE-- CS
       UPF0052 284 gvevieadl 292
                   g++vi++d+
  VIMSS7618210 302 GCRVISEDF 310
                   ******998 PP



Or compare VIMSS7618210 to CDD or PaperBLAST