PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS81550 to PF01933 (UPF0052)

VIMSS81550 has 379 amino acids

Query:       UPF0052  [M=293]
Accession:   PF01933.18
Description: Uncharacterised protein family UPF0052
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-67  211.4   0.0    1.1e-66  211.1   0.0    1.0  1  VIMSS81550  


Domain annotation for each sequence (and alignments):
>> VIMSS81550  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.1   0.0   1.1e-66   1.1e-66       1     257 [.      49     342 ..      49     357 .. 0.93

  Alignments for each domain:
  == domain 1  score: 211.1 bits;  conditional E-value: 1.1e-66
                 EEEEE-CHHHHHHHHHHCCSS.................CEEEEEE-----SHHHHHHHHHHTS---HHHHHHHHHH...--S-C..........HHHHH CS
     UPF0052   1 vvvlgGGtGlskllrglkevt.................aeltavvtvaDdggssGelrrelgllaigDirnvlval...idder..........lleeL 69 
                 v+vl GG+G++++l g++++                  +eltavv+++Dd +++G       l++++D+++++++l   id +r          ++eeL
  VIMSS81550  49 VTVLVGGVGGAHFLLGVQQLLglgqfgpqqcpdtlttgHELTAVVNIGDDAWIHG-------LRVCPDLDTCMYTLgdgIDPQRgwghrdetwhAKEEL 140
                 89*****************************************************.......**************999999999************** PP

                 CH-B-SS......SSSSTT-BHHHHHHHHHHHHHS.-HHHHHHHHHHHTT-SSEEEES-SS--EEEEEETTS-E.....EE.STTTGGGG-S....-EE CS
     UPF0052  70 fqyRfkg......dgdlaghslgnllLaalaeltg.sleeaiealskilkvrgrvlPatddpvelsaeledGee.....it.geskiseark.lkapik 154
                 ++y ++       d+dla+h++++++L+a     g +l++++ al++++++++r++Pa+dd++e++++++d        i+ +e+++   r+ +++p++
  VIMSS81550 141 ARYGVQPdwfelgDRDLATHLVRTQMLNA-----GyRLSQITTALCDRWQPGARLVPASDDRCETHVVITDPINdsrraIHfQEWWV---RYrAQVPTH 231
                 ***6665**********************.....99*********************************7655455666********...88899**** PP

                 E.EEEESTT----HHHHHHHHH-SEEEE-SS-IIIIIHHHHTSCCHHHHHHH-SSEEEEE--SB--TTTSTT-BHHHHHHHHHHCH-.....SS....S CS
     UPF0052 155 r.vflepegaeaapevleaikeAdlivlgpGslytSiiPiLlvpgiaealreskakkvlvsnimtqkGetdgfsvsdhvkaieravg.....kgvakay 247
                 + +++++e+a+aa e+++ai++Ad+i+++p+++++Si++iL++pgi+ alr+++a++v+ s+i+       g++++++++++++ +g     ++v+++y
  VIMSS81550 232 SfAYVGAEKASAATEAVAAIADADVILVAPSNPVVSIGAILAIPGIRGALRTTTAPVVGYSPIID------GKPLRGMADKCLTVIGvqstaTAVGQHY 324
                 ****************************************************************5......****************988885666666 PP

                 ........-SEEEEE-S- CS
     UPF0052 248 ........vdavlvntse 257
                         +d +lv++++
  VIMSS81550 325 garrttgiLDCWLVHEDD 342
                 88888888******8883 PP



Or compare VIMSS81550 to CDD or PaperBLAST