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Align VIMSS928999 to PF01933 (UPF0052)

VIMSS928999 has 324 amino acids

Query:       UPF0052  [M=293]
Accession:   PF01933.18
Description: Uncharacterised protein family UPF0052
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-97  312.7   0.4    1.4e-97  312.5   0.4    1.0  1  VIMSS928999  


Domain annotation for each sequence (and alignments):
>> VIMSS928999  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  312.5   0.4   1.4e-97   1.4e-97       1     292 [.       6     297 ..       6     298 .. 0.95

  Alignments for each domain:
  == domain 1  score: 312.5 bits;  conditional E-value: 1.4e-97
                  EEEEE-CHHHHHHHHHHCCSSCEEEEEE-----SHHHHHHHHHHTS---HHHHHHHHHH--S-CHHHHHCH-B-SS.SSSSTT-BHHHHHHHHHHHHH CS
      UPF0052   1 vvvlgGGtGlskllrglkevtaeltavvtvaDdggssGelrrelgllaigDirnvlvalidderlleeLfqyRfkg.dgdlaghslgnllLaalaelt 97 
                  ++v+gGGtG++ +lr+l++   ++tavvtvaDdggssG+lr+ ++l ++gD+rnvlva++d ++l+e++fqyRf++ dg lagh lgnl++a+++e++
  VIMSS928999   6 ITVIGGGTGIPVILRSLRHKDVDITAVVTVADDGGSSGNLRNIMKLTPPGDLRNVLVAMSDMPKLYERVFQYRFDQtDGALAGHPLGNLIIAGISEMQ 103
                  89*************************************************************************999******************** PP

                  S-HHHHHHHHHHHTT-SSEEEES-SS--EEEEEETTS-EEESTTTGGGG-S...-EEEEEEESTT--....--HHHHHHHHH-SEEEE-SS-IIIIIH CS
      UPF0052  98 gsleeaiealskilkvrgrvlPatddpvelsaeledGeeitgeskisearklkapikrvflepegae....aapevleaikeAdlivlgpGslytSii 191
                  gs+ +a+++l k+++v+g+++Pa+++ ++l+a+++dG+e+ ges+is+ +     i+rv+++ + +e    a ++v++ai+++d+ivlgpGslytSi+
  VIMSS928999 104 GSTYNAMQLLTKFFHVTGKIYPASETALTLHAVFQDGHEVAGESSISQYDG---MIERVYVTNAYNEdvpkASRKVVDAIMNSDMIVLGPGSLYTSIL 198
                  **********************************************88888...9***8887776644445*************************** PP

                  HHHTSCCHHHHHHH-SSEEEEE--SB--TTTSTT-BHHHHHHHHHHCH-SS....S-SEEEEE-S---HHHHHHHHT.TT--B-B--H.HHHCTT-EE CS
      UPF0052 192 PiLlvpgiaealreskakkvlvsnimtqkGetdgfsvsdhvkaieravgkgvakayvdavlvntsevpeellekyaa.egkepvelDa.kleklgvev 287
                  P+L++p+i++al e+ka + +++nimtq Get++fs +dhv+ ++r++g +    ++d vlvn ++vp+e++++++  e   +ve+D   l+++  ++
  VIMSS928999 199 PNLVIPEIRQALIETKADVTYICNIMTQYGETEHFSDADHVAVLNRHLGSD----VIDNVLVNVKKVPREYMASNEFdEYLVQVEHDFeGLRREAKTI 292
                  *************************************************88....*****************998887999******87898888888 PP

                  EEE-- CS
      UPF0052 288 ieadl 292
                  ++ ++
  VIMSS928999 293 VSSNF 297
                  77765 PP



Or compare VIMSS928999 to CDD or PaperBLAST