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Align VIMSS9849 to PF01933 (UPF0052)

VIMSS9849 has 311 amino acids

Query:       UPF0052  [M=293]
Accession:   PF01933.18
Description: Uncharacterised protein family UPF0052
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence  Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-53  167.8   0.5    2.2e-53  167.5   0.5    1.1  1  VIMSS9849  


Domain annotation for each sequence (and alignments):
>> VIMSS9849  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.5   0.5   2.2e-53   2.2e-53       1     263 [.       5     277 ..       5     305 .. 0.89

  Alignments for each domain:
  == domain 1  score: 167.5 bits;  conditional E-value: 2.2e-53
                EEEEE-CHHHHHHHHHHCCSS..CEEEEEE-----SHHHHHHHHHHTS---HHHHHHHHHH...--S-C..........HHHHHCH-B-SS.....SSSS CS
    UPF0052   1 vvvlgGGtGlskllrglkevt..aeltavvtvaDdggssGelrrelgllaigDirnvlval...idder..........lleeLfqyRfkg.....dgdl 80 
                ++vl+GGtG++kll+glk+v   +el ++v++++d+++         l+  +D+++vl++l   i++e+          ++e+L ++ f++     d+d 
  VIMSS9849   5 ITVLSGGTGTPKLLQGLKRVVnnEELAVIVNTGEDTWIGD-------LYLSPDVDTVLYTLadlINEETwygvkedtfyTHEQLKNLGFDEvlrigDKDR 97 
                89*******************999**************99.......**************88888888******************9999********* PP

                TT-BHHHHHHHHHHHHHS.-HHHHHHHHHHHTT-SSEEEES-SS--EEEEEET.TS-E..EE.STTTGGGG-S...-EEE.EEEESTT----HHHHHHHH CS
    UPF0052  81 aghslgnllLaalaeltg.sleeaiealskilkvrgrvlPatddpvelsaele.dGee..it.geskisearklkapikr.vflepegaeaapevleaik 174
                a ++ ++ +L+      g +l+e+++  + +l+++++v+P+tdd+ve+++  + dG++  ++ ++ +++++   ++++ + ++ +   a++ ++++eaik
  VIMSS9849  98 ALKMHKTYYLKR-----GhKLSEVVDMEKVALGIKAKVIPMTDDRVETKILAKvDGKVdlLKfHDFWVKRK--GDVEVLDvIYENSLYAKPCEKAVEAIK 190
                ************.....99*****************************9988536666778889****333..57999999999999************* PP

                H-SEEEE-SS-IIIIIHHHHTSCCHHHHHHH-SSEEEEE--SB--TTTSTT-BHHHHHHHHHHCH-........SS....S...-SEEEEE-S---HHHH CS
    UPF0052 175 eAdlivlgpGslytSiiPiLlvpgiaealreskakkvlvsnimtqkGetdgfsvsdhvkaieravg........kgvakay...vdavlvntsevpeell 263
                ++dl+++gp++++tSi+PiL ++gi+e l  +++k+v+vs+i++      + +vs+++ ++++a g        ++    y   vd++++++   ++e+ 
  VIMSS9849 191 NSDLVIIGPSNPITSIGPILSLNGIKELL--KDKKVVVVSPIVG------NSAVSGPAGKLMKAKGydvsvkgiYEF---YkdiVDVLVIDNV--DKEIA 277
                *****************************..5699********9......****************77666333333...3666999999776..44444 PP



Or compare VIMSS9849 to CDD or PaperBLAST