PaperBLAST – Find papers about a protein or its homologs

 

Align XP_001401278.1 to PF01933 (UPF0052)

XP_001401278.1 has 509 amino acids

Query:       UPF0052  [M=293]
Accession:   PF01933.18
Description: Uncharacterised protein family UPF0052
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-64  203.5   0.0    2.7e-64  203.3   0.0    1.1  1  XP_001401278.1  


Domain annotation for each sequence (and alignments):
>> XP_001401278.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.3   0.0   2.7e-64   2.7e-64       2     242 ..      12     385 ..      11     443 .. 0.92

  Alignments for each domain:
  == domain 1  score: 203.3 bits;  conditional E-value: 2.7e-64
                     EEEE-CHHHHHHHHHHCCSS....CEEEEEE-----SHHHHHHHHHHTS---HHHHHHHHHH--S-C......HHHHHCH-B-SSSSSST..... CS
         UPF0052   2 vvlgGGtGlskllrglkevt....aeltavvtvaDdggssGelrrelgllaigDirnvlvalidder......lleeLfqyRfkgdgdla..... 81 
                     vv++GG+++++l++++++v+    ++l+++++++D+ggss+el+r +g+++igD+r++lv+li + +      ++++Lf++R+++d +la     
  XP_001401278.1  12 VVFSGGSAANNLVDVFNAVRgskhCSLSYIIPISDNGGSSSELIRIFGGPGIGDVRSRLVRLIPESPpnseraAIKALFNHRLPADPSLAhaewh 106
                     9*********************9999************************************98888889999************99999999** PP

                     ..............................................T-BHHHHHHHHHHHHH.S-HHHHHHHHHHHTT-..SS.EEEES..-SS- CS
         UPF0052  82 ..............................................ghslgnllLaalaelt.gsleeaiealskilkv..rg.rvlPa..tddp 124
                                                                   ++s+gnl+L++ a+l+ gs+e+ai++l +i +v  +  rv+Pa  ++ +
  XP_001401278.1 107 sivdgtsilwaaitpakrelirsffnllnleilkrarpptstfeftSASVGNLFLTG-ARLFsGSFESAIYLLGSIGGVpwDLvRVIPAinSNFS 200
                     *********************************************************.999878***************553479********** PP

                     -EEEEEETTS-EEESTTTGG.........................................................GG-S....-EEE.EEEES CS
         UPF0052 125 velsaeledGeeitgeskis.........................................................eark.lkapikr.vflep 160
                     +++sa l++G++i g+++is                                                         +  + l+++i+r ++++p
  XP_001401278.1 201 HHISASLANGTVIVGQNSIShpceaiplrsprplladgtensphhpsstptplyfedddhppgflptlrhknisfskSDTQdLPSRISRiWYINP 295
                     *******************999*****************************************************96445569************ PP

                     TT--....--HHHHHHHHH-SEEEE-SS-IIIIIHHHHTSCCHHHHH.HH-SSEEEEE--SB--TTTST....T-BHHHHHHHHHHCH-SS CS
         UPF0052 161 egae....aapevleaikeAdlivlgpGslytSiiPiLlvpgiaeal.reskakkvlvsnimtqkGetd....gfsvsdhvkaieravgkg 242
                     +g+e    a+p+v+e +++A++i++++GslytSiiP+++++g+++a+     ++k+l++n      et      f+++d+v+ai ra ++ 
  XP_001401278.1 296 YGQEiqppANPRVIESLHDAQAIIYSIGSLYTSIIPSIILRGVGQAIaTGPARHKILILNGSL-DRETGpshePFTAADFVEAITRAGEES 385
                     ***88888***************************************7778889******875.333334446************998844 PP



Or compare XP_001401278.1 to CDD or PaperBLAST