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Align XP_003717966.1 to PF01933 (UPF0052)

XP_003717966.1 has 522 amino acids

Query:       UPF0052  [M=293]
Accession:   PF01933.18
Description: Uncharacterised protein family UPF0052
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-64  204.6   0.0    1.4e-64  204.2   0.0    1.1  1  XP_003717966.1  


Domain annotation for each sequence (and alignments):
>> XP_003717966.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.2   0.0   1.4e-64   1.4e-64       1     288 [.      36     489 ..      36     492 .. 0.91

  Alignments for each domain:
  == domain 1  score: 204.2 bits;  conditional E-value: 1.4e-64
                     EEEEE-CHHHHHHHHHHCCSS....CEEEEEE-----SHHHHHHHHHHTS---HHHHHHHHHH--S-C.....HHHHHCH-B-SSSSSST..... CS
         UPF0052   1 vvvlgGGtGlskllrglkevt....aeltavvtvaDdggssGelrrelgllaigDirnvlvalidder.....lleeLfqyRfkgdgdla..... 81 
                     +vv++GGt+++ l+++++++     + lt+v++++D+ggss+el+r+lg++ +gDir++lv+li +++     +l++Lf++R+++d   a     
  XP_003717966.1  36 IVVFSGGTAANFLVDVFNRIVerrgCPLTYVIPISDNGGSSSELIRVLGGPSVGDIRSRLVRLIPNQEneentALRALFEHRLSADPGTAklewl 130
                     8********************999999************************************7777667788************7666666789 PP

                     .............................................T-BHHHHHHHHHHHHH.S-HHHHHHHHHHHTT-..SSEEEES..-SS--E CS
         UPF0052  82 .............................................ghslgnllLaalaelt.gsleeaiealskilkv..rgrvlPa..tddpve 126
                                                                  ++s+gn++L++ a+l+ gs+e+ai++l+ i+++  +++vlPa  ++ +++
  XP_003717966.1 131 divegnhilwtfisspkrelirsvlntlnlevvkrsrptslfnfsKASVGNMFLTG-ARLFsGSFEAAIYLLAMICSIptTVSVLPAinSNFTHH 224
                     9999999999999999999999**********************************.999878***************7445************* PP

                     EEEEETTS-EEESTTTGG............................................................................. CS
         UPF0052 127 lsaeledGeeitgeskis............................................................................. 144
                     + a l+dG+++tg+ +is                                                                             
  XP_003717966.1 225 IAASLADGTVLTGQVAIShpsaptavpdsmaaaaaaaaaaaaaatnslspaaaarqhpqdleptgpaamarlaaaaealntedatlpgslpvlrs 319
                     *****************8899************************************************************************** PP

                     .......GG-S....-EEE.EEEESTT--....--HHHHHHHHH-SEEEE-SS-IIIIIHHHHTSCCHHHHH...HH-SSEEEEE--SB--TTTS CS
         UPF0052 145 .......eark.lkapikr.vflepegae....aapevleaikeAdlivlgpGslytSiiPiLlvpgiaeal...reskakkvlvsnimtqkGet 223
                            + ++ l+a+i r ++++p+g e    a+p+vl+a++ A++iv+++GslytSiiP+L+++g+++a+   + + a+kvl++n   +  et
  XP_003717966.1 320 hnisfskDDEEdLPARIGRvWYINPYGHEiwpvANPKVLAALRGAEVIVYSIGSLYTSIIPSLILRGVGSAIaggSGAAATKVLILNSSVD-RET 413
                     *****97446669***************98999***************************************65556789*******9973.333 PP

                     T....T-BHHHHHHHHHHCH-.....SS....S-SEEE.EE-S---HHHHHHHHTTT--B-B--H.HHHCTT-EEE CS
         UPF0052 224 d....gfsvsdhvkaieravg.....kgvakayvdavl.vntsevpeellekyaaegkepvelDa.kleklgvevi 288
                           +s+ d+v a+ ra++     ++ a++yv++++ ++ ++v++   + ++ +g+    +D+ +l ++g+ ++
  XP_003717966.1 414 GpkedPMSAVDFVVALARAASggeggERDARKYVTHLVyLDGDDVEDGGAHAQSGSGELAPVVDKaALGTMGIVCV 489
                     33445**************99999998889999*****88999999988877777777777777656777776655 PP



Or compare XP_003717966.1 to CDD or PaperBLAST