PaperBLAST – Find papers about a protein or its homologs

 

Align ecocyc::G6402-MONOMER to PF01933 (CofD)

ecocyc::G6402-MONOMER has 302 amino acids

Query:       CofD  [M=290]
Accession:   PF01933.22
Description: 2-phospho-L-lactate transferase CofD
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence              Description
    ------- ------ -----    ------- ------ -----   ---- --  --------              -----------
    9.9e-88  280.1   0.1    1.2e-87  279.8   0.1    1.0  1  ecocyc::G6402-MONOMER  


Domain annotation for each sequence (and alignments):
>> ecocyc::G6402-MONOMER  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.8   0.1   1.2e-87   1.2e-87       1     277 [.      12     290 ..      12     300 .. 0.91

  Alignments for each domain:
  == domain 1  score: 279.8 bits;  conditional E-value: 1.2e-87
                   CofD   1 ivvigGGtGlsklLrgLkkytaeitaivtvaDdggssGrlreelgllppgDirnvlvaLadeeklleeLfqyrfkgdgdlaghslgnl 88 
                            +v++gGG+Gl ++L++L+++ +++t ivt++D+ggs+Gr+r++ g +++gD+rn+l++L++e+++ +++f+yrf g+g+l+gh+lgnl
  ecocyc::G6402-MONOMER  12 VVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDNGGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNL 99 
                            8*************************************************************************************** PP

                   CofD  89 lLaalaeitgdleeaiealskvlavrgkvlPatdepvelhaeledgtvvegeskiseakkaeakikrvflepedakalpevleaieeA 176
                            +L+al++++ +  eai+ ++++l+v+ +++P++++pv+l+a  ++g++v ge++i   ++++++i+++ l+p+ + a++e+++ai+eA
  ecocyc::G6402-MONOMER 100 MLKALDHLSVRPLEAINLIRNLLKVDTHLIPMSEHPVDLMAIDDQGHEVYGEVNI---DQLTTPIQELLLTPNVP-ATREAVHAINEA 183
                            ********99*********************************************...66777********9999.************ PP

                   CofD 177 dlivlgPGslytSilPnLlvpgiaealreskakvvyvsnimtqpGe.tdgytvsdhvkailehlgkgyidavlv....nteeipeell 259
                            dli++gPGs+ytS++P+Ll+++ia+alr++ a++vy+ n+ ++ +  + +++++ +++ +++ +gk++idav+v    + + ++e+++
  ecocyc::G6402-MONOMER 184 DLIIIGPGSFYTSLMPILLLKEIAQALRRTPAPMVYIGNLGRELSLpAANLKLESKLAIMEQYVGKKVIDAVIVgpkvDVSAVKERIV 271
                            ******************************************9997689************************944334445555544 PP

                   CofD 260 ekyae.egaepvevDaekl 277
                             ++   +++ p+++D++ l
  ecocyc::G6402-MONOMER 272 IQEVLeASDIPYRHDRQLL 290
                            4443336667888886444 PP



Or compare ecocyc::G6402-MONOMER to CDD or PaperBLAST