PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS119785 to PF01973 (MptE-like)

VIMSS119785 has 578 amino acids

Query:       MptE-like  [M=171]
Accession:   PF01973.22
Description: 6-hydroxymethylpterin diphosphokinase MptE-like
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-59  187.0   0.9    1.2e-59  187.0   0.9    2.0  2  VIMSS119785  


Domain annotation for each sequence (and alignments):
>> VIMSS119785  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.29      0.29      48      77 ..      62      71 ..      42     112 .. 0.49
   2 !  187.0   0.9   1.2e-59   1.2e-59       2     171 .]     190     359 ..     189     359 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.29
    MptE-like 48 rdkaviiaadsalkaLlkegIkPDivvslD 77
                 ++++vi+                     l 
  VIMSS119785 62 ESDFVIFG--------------------LG 71
                 23333332....................22 PP

  == domain 2  score: 187.0 bits;  conditional E-value: 1.2e-59
    MptE-like   2 nllknlkeilk.psleellnkfkgnkpaiivgaGPSLeknlellkelrdkaviiaadsalkaLlkegIkPDivvslDpqevsyevlkeaekkgsivlv 98 
                  ++++nlk i+k + +++++n +kg  pa+iv+aGPSL+kn++llk++++k+++i+++++lk Ll++gI+PD+v+ +Dp+e ++e++k+a ++  ++++
  VIMSS119785 190 SYMNNLKFIQKsTIINHFKNIYKG-MPAVIVSAGPSLSKNIDLLKDYQSKFIVITGGRTLKLLLDKGIRPDFVCVIDPDEPAFEIMKDALDC-TVPII 285
                  689*********9***********.*******************************************************************.***** PP

    MptE-like  99 fasgvnpellkkykgpklflvtgttqa.lellseekgeilfgGgsvanaavdlAvelgfkeIiliGqDlaytee 171
                  +++ +n++++k+ykg k+f++++++   ++++ e+  ++l++Ggsva+ + +lA+++g+++Ii++GqD+ayt++
  VIMSS119785 286 YSEFTNYKVIKNYKGDKIFFTDTGVNDaSKDFFEKDIDNLYEGGSVAHVCASLAEYIGCNRIIFVGQDFAYTND 359
                  ******************999987776866665666669********************************985 PP



Or compare VIMSS119785 to CDD or PaperBLAST