PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS188635 to PF01973 (MAF_flag10)

VIMSS188635 has 231 amino acids

Query:       MAF_flag10  [M=171]
Accession:   PF01973.18
Description: Protein of unknown function DUF115
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.8e-31   93.9   0.0    7.8e-31   93.2   0.0    1.2  1  VIMSS188635  


Domain annotation for each sequence (and alignments):
>> VIMSS188635  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   0.0   7.8e-31   7.8e-31       4     167 ..      36     183 ..      31     186 .. 0.86

  Alignments for each domain:
  == domain 1  score: 93.2 bits;  conditional E-value: 7.8e-31
   MAF_flag10   4 lknlkenlkpslkellnkfkgnkpaiivgaGPSLeknlellkelrdkaviiaadtalkaLlkegIkPDivvs.lDpqeasyevfkeaekkgdiplvfa 100
                  ++n ++++k++l++++      ++++++gaGP Le+ l++     ++ + iaad+a++aLl++gI+PD+vv+ lD+    ++++ ea++k  +++v+a
  VIMSS188635  36 MENDNYIIKEELNSIIM-----QKVYVFGAGPNLEEALKKGD--FKDGTKIAADGATSALLEYGITPDVVVTdLDG---RIRDLLEASRK-AVMVVHA 122
                  55566666666666666.....79************888763..3788899*************************...9999******9.******* PP

   MAF_flag10 101 sgvnpellkkykgpkiflvtgstqa..lelleeekneilfgGgsvantaldlAvklgfkeIiliGqDla 167
                  +g+n ++l  + +  ++l t  +q+  l+ +       +fgG++++++a +lA ++g+keI+l+G+D++
  VIMSS188635 123 HGDNMDKLPLVVEFPLVLGT--CQTepLDIV------YNFGGFTDGDRAAFLAEEMGAKEIVLVGFDFS 183
                  *************9997555..553225444......9*****************************96 PP



Or compare VIMSS188635 to CDD or PaperBLAST