PaperBLAST – Find papers about a protein or its homologs

 

Align NP_415192.1 to PF02130 (UPF0054)

NP_415192.1 has 155 amino acids

Query:       UPF0054  [M=128]
Accession:   PF02130.17
Description: Uncharacterized protein family UPF0054
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-43  133.8   0.0    1.9e-43  133.6   0.0    1.0  1  NP_415192.1  


Domain annotation for each sequence (and alignments):
>> NP_415192.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   0.0   1.9e-43   1.9e-43       7     126 ..      20     142 ..      15     144 .. 0.91

  Alignments for each domain:
  == domain 1  score: 133.6 bits;  conditional E-value: 1.9e-43
      UPF0054   7 leklikkvleealkkekle.evsvllvdneeirelnkeyrgkdkpTDVLSFpleeeeeeee..lGDivisvekakeqaeeyghslerelafllvHgll 101
                  +e+ ++++l++++ +++ e ev++ +vd++e ++ln +yrgkdkpT+VLSFp+e     e   lGD+vi+ ++++++a+e+g+ le ++a+++vHg l
  NP_415192.1  20 EESQFQTWLNAVIPQFQEEsEVTIRVVDTAESHSLNLTYRGKDKPTNVLSFPFEVPPGMEMslLGDLVICRQVVEKEAQEQGKPLEAHWAHMVVHGSL 117
                  57789999999996555556**********************************998883356*********************************** PP

      UPF0054 102 HllGYDHeeeeeekeMeekeeeile 126
                  HllGYDH+e++e++eMe++e+ei+ 
  NP_415192.1 118 HLLGYDHIEDDEAEEMEALETEIML 142
                  ***********************95 PP



Or compare NP_415192.1 to CDD or PaperBLAST