PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS1054959 to PF02130 (YbeY)

VIMSS1054959 has 158 amino acids

Query:       YbeY  [M=129]
Accession:   PF02130.21
Description: Endoribonuclease YbeY
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.8e-44  135.1   0.0    7.9e-44  134.9   0.0    1.0  1  VIMSS1054959  


Domain annotation for each sequence (and alignments):
>> VIMSS1054959  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.9   0.0   7.9e-44   7.9e-44       5     128 ..      11     141 ..       8     142 .. 0.93

  Alignments for each domain:
  == domain 1  score: 134.9 bits;  conditional E-value: 7.9e-44
          YbeY   5 eeleklikkvleaalkeeklkkea.elsvllvdneeikelnkeyrnkdkpTDVLSFpleeeeee......lGDivisvekaeeqaeeyghslerela 94 
                   ++le+l++k + aa +++ lk+ + elsv+++d+++i+ ln e+r+kdkpT+VLSFp+   +        lGDivi+ e++e++a+e g+ +e++l+
  VIMSS1054959  11 ASLESLVSKSVAAAWNNLGLKSATsELSVVFTDDASIQLLNGEWRGKDKPTNVLSFPAFPVKAGsqpgpmLGDIVIARETVEREAKEEGKPIENHLS 107
                   5678888888888988888877655********************************9988888899****************************** PP

          YbeY  95 fllvHglLHLlGYDHeeeeeekeMeekeeeilkk 128
                   +l+vHg+LHLlGYDHe++ee+++Me++e+eil++
  VIMSS1054959 108 HLVVHGFLHLLGYDHETDEEAEVMEAREREILHA 141
                   ********************************87 PP



Or compare VIMSS1054959 to CDD or PaperBLAST