PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS145979 to PF02130 (YbeY)

VIMSS145979 has 157 amino acids

Query:       YbeY  [M=129]
Accession:   PF02130.21
Description: Endoribonuclease YbeY
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-40  123.6   0.0    2.8e-40  123.4   0.0    1.0  1  VIMSS145979  


Domain annotation for each sequence (and alignments):
>> VIMSS145979  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.4   0.0   2.8e-40   2.8e-40       8     127 ..      21     142 ..      15     144 .. 0.94

  Alignments for each domain:
  == domain 1  score: 123.4 bits;  conditional E-value: 2.8e-40
         YbeY   8 eklikkvleaalkeeklkkeaelsvllvdneeikelnkeyrnkdkpTDVLSFpleeeeee....lGDivisvekaeeqaeeyghslerelafllvHgl 101
                  e  ++++lea+l    ++   e+++ lvd++e ++ln +yr+kdk T+VLSFp+e + e     lGD++i+ +++e++a e+++ l  ++a+++vHg 
  VIMSS145979  21 EGDFQRWLEAVLP--LFQPVSEVTIRLVDEAESHDLNLTYRGKDKSTNVLSFPFEAPPEIelplLGDLIICRQVVEKEAIEQEKALLAHWAHMVVHGS 116
                  5678899999997..577889*************************************999************************************* PP

         YbeY 102 LHLlGYDHeeeeeekeMeekeeeilk 127
                  LHLlGYDH+++ee++eMe  e+ei++
  VIMSS145979 117 LHLLGYDHIDDEEAEEMELIETEIMH 142
                  ************************97 PP



Or compare VIMSS145979 to CDD or PaperBLAST