PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS326524 to PF02130 (UPF0054)

VIMSS326524 has 161 amino acids

Query:       UPF0054  [M=128]
Accession:   PF02130.17
Description: Uncharacterized protein family UPF0054
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.8e-39  118.5   0.0    1.1e-38  118.2   0.0    1.0  1  VIMSS326524  


Domain annotation for each sequence (and alignments):
>> VIMSS326524  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   0.0   1.1e-38   1.1e-38      11     128 .]      27     151 ..      19     151 .. 0.89

  Alignments for each domain:
  == domain 1  score: 118.2 bits;  conditional E-value: 1.1e-38
      UPF0054  11 ikkvleealkkekle..evsvllvdneeirelnkeyrgkdkpTDVLSFpleeeeeeee......lGDivisvekakeqaeeyghslerelafllvHgl 100
                  ++k++ ++l+  +++  ++ + +vd++e r ln +yr+kd++T+VLSFp++  e   +      lGDiv++ ++++++a e+g+sl  ++a+l+vHg+
  VIMSS326524  27 FRKWVAATLQ-GRIRkaDLAIRIVDEKEGRALNYHYRNKDYATNVLSFPAQLPEPFPKalkiplLGDIVMCAPVIAREATEQGKSLSAHYAHLTVHGT 123
                  6777777775.2333469*******************************9998777235899************************************ PP

      UPF0054 101 lHllGYDHeeeeeekeMeekeeeileel 128
                  lHllG++He+++e+  Me++e+eil++l
  VIMSS326524 124 LHLLGWNHEDHQEADAMEQLEREILANL 151
                  *************************875 PP



Or compare VIMSS326524 to CDD or PaperBLAST