PaperBLAST – Find papers about a protein or its homologs

 

Align WP_011160973.1 to PF02130 (UPF0054)

WP_011160973.1 has 146 amino acids

Query:       UPF0054  [M=128]
Accession:   PF02130.17
Description: Uncharacterized protein family UPF0054
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-41  125.0   0.1    9.9e-41  124.8   0.1    1.0  1  WP_011160973.1  


Domain annotation for each sequence (and alignments):
>> WP_011160973.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.8   0.1   9.9e-41   9.9e-41      24     127 ..      30     137 ..       7     138 .. 0.88

  Alignments for each domain:
  == domain 1  score: 124.8 bits;  conditional E-value: 9.9e-41
         UPF0054  24 leevsvllvdneeirelnkeyrgkdkpTDVLSFpleeeeee..ee..lGDivisvekakeqaeeyghslerelafllvHgllHllGYDHeeeeee 114
                      + +++++v+ne+i+eln+ yr+k++pTDVLSFp +       e+  lGD++is++ka+ qa+ ++hslere+afl+vHg+lHl GY H +eee 
  WP_011160973.1  30 KKLMHLIFVTNEKIQELNSFYRQKNYPTDVLSFPNDLTFFAglEDnsLGDVFISFSKAQVQAQTAKHSLEREIAFLAVHGFLHLKGYQHRTEEEF 124
                     33789*****************************9988777552267************************************************ PP

         UPF0054 115 keMeekeeeilee 127
                     ++M +++e+il++
  WP_011160973.1 125 QIMLALQEKILQN 137
                     ***********86 PP



Or compare WP_011160973.1 to CDD or PaperBLAST