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Align NP_113642.1 to PF02696 (UPF0061)

NP_113642.1 has 669 amino acids

Query:       UPF0061  [M=468]
Accession:   PF02696.14
Description: Uncharacterized ACR, YdiU/UPF0061 family
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   7.8e-126  406.6   0.0   1.3e-125  405.8   0.0    1.3  1  NP_113642.1  


Domain annotation for each sequence (and alignments):
>> NP_113642.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  405.8   0.0  1.3e-125  1.3e-125      19     465 ..      82     621 ..      76     624 .. 0.89

  Alignments for each domain:
  == domain 1  score: 405.8 bits;  conditional E-value: 1.3e-125
      UPF0061  19 ydeveaaefpkkilrvrndalleelgldeeevkdeeliei..fgke...kgiepflalrYhGyQFGeynpqLGDGRgfllgqvrdkdgelydfglKGs 111
                  +++v+++ +++ +l++ ++  l+ lgl +  ++++e + +  f+++    g ep  a  Y G+QFG++++qLGDG ++ lg+v   +ge ++++lKG+
  NP_113642.1  82 FTRVQPTPLRQPRLVALSEPALALLGLGAPPAREAEAEAAlfFSGNallPGAEPA-AHCYCGHQFGQFAGQLGDGAAMYLGEVCTATGERWELQLKGA 178
                  678999999******999999999999876666655554422788899999****.****************************************** PP

      UPF0061 112 GlTPySRsaDGrlvLksgvREvlasealhklgvrtsralslietgekllRe....dePspersavvvRlarshiRfGtferlkylk...........r 194
                  G TP+SR+aDGr vL+s++RE+l+sea+ +lgv+t+ra   ++++++++R+     +P+ e+++vv+R+a+++iRfG+fe +k ++           r
  NP_113642.1 179 GPTPFSRQADGRKVLRSSIREFLCSEAMFHLGVPTTRAGACVTSESTVVRDvfydGNPKYEQCTVVLRVASTFIRFGSFEIFKSADehtgragpsvgR 276
                  **************************************************8887689*************************9876111111222224 PP

      UPF0061 195 ldllkkLldyvieeyypeladee.....ekyaqfyaelvervAelvAqWmaaGFchgVlNTDNmsilGeslDYGPyaFldkydpkftaayfDyagrYs 287
                  +d   +Lldyvi+++ype+++ +     ++ a+f++e+ +r+A++vA+W+++GFchgVlNTDNmsilG+++DYGP++Fld+ydp+++++ +D +grY+
  NP_113642.1 277 NDIRVQLLDYVISSFYPEIQAAHasdsvQRNAAFFREVTRRTARMVAEWQCVGFCHGVLNTDNMSILGLTIDYGPFGFLDRYDPDHVCNASDNTGRYA 374
                  566789*************5555566669********************************************************************* PP

      UPF0061 288 yanQpsiilwNLeqlaeplallieaeeleeale.eykevyttkYaqlmlkkLGleklsekekefdselleellelLqetqvdYneffveLaeskskkw 384
                  y++Qp++++wNL++lae+l+  ++ e  e+ l+ e++  ++++Y q m++kLGl +++ +e   d +l+++lle ++ t +d++++f+ L++   +  
  NP_113642.1 375 YSKQPEVCRWNLRKLAEALQPELPLELGEAILAeEFDAEFQRHYLQKMRRKLGLVQVELEE---DGALVSKLLETMHLTGADFTNTFYLLSSFPVELE 469
                  ***********************999888877549*******************6665544...56*************************9998888 PP

      UPF0061 385 rdeaesileesekelee..................................................................ekleeWrelYkklle 416
                  +   +++l+   ++  +                                                                   ++ +W ++Y+++l 
  NP_113642.1 470 SPGLAEFLARLMEQCASleelrlafrpqmdprqlsmmlmlaqsnpqlfalmgtragiarelerveqqsrleqlsaaelqsrnqGHWADWLQAYRARLD 567
                  888888887777545556669999*********************************************************9999**********999 PP

      UPF0061 417 eleed......eleeraerlkkvNpktvllrplieeviekiaeeddlsplkklle 465
                  +  e        ++e  ++++  Npk+vl++++++++ie+ ae+ d+s+++++l+
  NP_113642.1 568 KDLEGagdaaaWQAEHVRVMHANNPKYVLRNYIAQNAIEA-AERGDFSEVRRVLK 621
                  86554222221345566789999*****************.99*****9998876 PP



Or compare NP_113642.1 to CDD or PaperBLAST