PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS158664 to PF02698 (DUF218)

VIMSS158664 has 189 amino acids

Query:       DUF218  [M=131]
Accession:   PF02698.17
Description: DUF218 domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.3e-33  100.3   0.1    5.8e-33   99.9   0.1    1.1  1  VIMSS158664  


Domain annotation for each sequence (and alignments):
>> VIMSS158664  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   0.1   5.8e-33   5.8e-33       1     129 [.      39     178 ..      39     180 .. 0.84

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 5.8e-33
       DUF218   1 daivVLGaal........pllaeRldeaaelyrag...kiivsGg.gadedvseaeamaeylrelgvpeeailledrsrnTeenarfskellkersil 86 
                  d++++LGa++         +l+eRld+a+++++++   k+ivsGg gade+ +ea++m+eyl++ g+ +++i +e++s+ Teen+++s + ++  + +
  VIMSS158664  39 DTVLILGAKVkgnpavpsLVLQERLDAAVAYLNEYpkaKVIVSGGqGADESATEASVMEEYLVNEGIARKRIETETKSKRTEENIKYSNAKFNLGKTV 136
                  68999**777888888988899*************8666******9999*******************99**********************4347** PP

       DUF218  87 lVTsafHmpRalllfrkag.....aptpsaealsasees..alraalrEy 129
                  +VTs++Hm Ral+l++++g               a++++  + + ++rE+
  VIMSS158664 137 IVTSDYHMYRALMLAKRQGidasgL--------PATSQTfaKYKGMMREV 178
                  ******************8443332........33333123555677776 PP



Or compare VIMSS158664 to CDD or PaperBLAST