PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS244883 to PF02698 (DUF218)

VIMSS244883 has 221 amino acids

Query:       DUF218  [M=131]
Accession:   PF02698.17
Description: DUF218 domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.5e-25   74.8   0.1    4.6e-25   74.4   0.1    1.2  1  VIMSS244883  


Domain annotation for each sequence (and alignments):
>> VIMSS244883  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.1   4.6e-25   4.6e-25       6     106 ..      32     147 ..      27     184 .. 0.82

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 4.6e-25
       DUF218   6 LGaalpllaeRldeaaelyrag...kiivsGg.....gadedvseaeamaeylrelgvpeeailledrsrnTeenarfskell.....kersillVTs 90 
                  LG   +++   +++ aely++g    i+++G      +++ ++ eae ++e ++elgvpe+ail+e+++rnT en+r s++ll       +s+llV++
  VIMSS244883  32 LG---SHDLGVAETTAELYHRGmapVIVFTGAtsrttHERMPRGEAEHYRERAVELGVPERAILVEPNARNTGENIRLSRALLedlgmPVTSVLLVSK 126
                  55...455668899********8755*****9*99875568999***************99**************************85459****** PP

       DUF218  91 afHmpRalllfrkag.....a 106
                  ++  +Ra++++rk+      +
  VIMSS244883 127 PYEERRAYATARKLWpnvewV 147
                  **************4333331 PP



Or compare VIMSS244883 to CDD or PaperBLAST