PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS53787 to PF02698 (DUF218)

VIMSS53787 has 254 amino acids

Query:       DUF218  [M=131]
Accession:   PF02698.17
Description: DUF218 domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-25   74.9   0.0    6.7e-25   73.9   0.0    1.5  2  VIMSS53787  


Domain annotation for each sequence (and alignments):
>> VIMSS53787  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.0   6.7e-25   6.7e-25       2     128 ..      72     208 ..      71     220 .. 0.80
   2 ?   -3.0   0.0      0.39      0.39      57      70 ..     232     245 ..     227     252 .. 0.56

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 6.7e-25
      DUF218   2 aivVLGaal.......pllaeRldeaaelyrag..k.iivsGggadedvseaeamaeylrelgvpeeailledrsrnTeenarfskellkersillVTs 90 
                 + vVLG++        ++ ++R+d+a++ly++g  + +++sG++a+++++e   m++ l++ g+p+e+i l+ ++  T ++++++ke+++ +++l++T+
  VIMSS53787  72 VAVVLGTSKyigktlnEYYTNRIDAAIALYQQGkvRnFLLSGDNAHRSYNEPWTMKRDLLRAGIPAENISLDYAGFRTLDSIVRAKEIFDTDNFLIITQ 170
                 789***44456666789999*************6626******999*******************99**********************5458****** PP

      DUF218  91 afHmpRalllfrkag.......aptp.saealsaseesalraalrE 128
                  fH+ Ral+++r ++       +p p +         s  +  lrE
  VIMSS53787 171 RFHCERALFIARYQDiqasclaVPGPsNH--------SGFKVRLRE 208
                 **************754333222112111........133344444 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.39
      DUF218  57 eeailledrsrnTe 70 
                 +e i++e+   +T 
  VIMSS53787 232 KEPIIVESDTESTS 245
                 55677655444443 PP



Or compare VIMSS53787 to CDD or PaperBLAST