PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS5797842 to PF02698 (DUF218)

VIMSS5797842 has 230 amino acids

Query:       DUF218  [M=131]
Accession:   PF02698.17
Description: DUF218 domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.9e-26   77.0   0.0      1e-25   76.5   0.0    1.2  1  VIMSS5797842  


Domain annotation for each sequence (and alignments):
>> VIMSS5797842  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.0     1e-25     1e-25       4     115 ..      62     180 ..      59     207 .. 0.82

  Alignments for each domain:
  == domain 1  score: 76.5 bits;  conditional E-value: 1e-25
        DUF218   4 vVLGaal..pllaeRldeaaelyrag..k.iivsGggadedvseaeamaeylrelgvpeeailledrsrnTeenarfskellkersillVTsafHmp 95 
                   +VLGa+   +++++R+++aa+ly+ag  k ++vsG+++++++ e +am++ l+++gvpe ai+ + ++ +T +++++++++++e++i ++++afH +
  VIMSS5797842  62 LVLGAKPgnRYFTRRINTAAALYHAGkvKwLLVSGDNGKKEYDEPSAMQQALIAKGVPEAAIFCDYAGFSTLDSVVRARKVFGESRITIISQAFHNQ 158
                   6999555679999*************6527******8889******************99**********************6569*********** PP

        DUF218  96 Ralllfrkag.......aptpsaeals 115
                   Ra +l++++g       a     + l+
  VIMSS5797842 159 RAIWLAQQYGidaigvnA-----PDLN 180
                   *********866544221.....2222 PP



Or compare VIMSS5797842 to CDD or PaperBLAST