PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS741860 to PF02698 (DUF218)

VIMSS741860 has 240 amino acids

Query:       DUF218  [M=131]
Accession:   PF02698.17
Description: DUF218 domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-31   94.7   0.1    3.7e-31   94.1   0.1    1.2  1  VIMSS741860  


Domain annotation for each sequence (and alignments):
>> VIMSS741860  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1   0.1   3.7e-31   3.7e-31       2     131 .]      67     227 ..      66     227 .. 0.81

  Alignments for each domain:
  == domain 1  score: 94.1 bits;  conditional E-value: 3.7e-31
       DUF218   2 aivVLGaal..........pllaeRldeaaelyrag.....k..iivsGg.gad.edvseaeamaeylrelgvpeeailledrsrnTeenarfskell 80 
                  +iv+LGa++          +   +R+d+ aely a      +  ++vsGg   + +++ ea+ +a yl+++gv + +++ e+rs +T+enarf++ +l
  VIMSS741860  67 VIVMLGAGIerrdgvaippRDALARIDKTAELYSACrrtaqRctVVVSGGdP-QvRGIAEADTYAPYLLARGVASADLIREKRSHTTYENARFTAPIL 163
                  79999*666777777888866788*********88876665266******64.4499*****************88********************** PP

       DUF218  81 ...ker.sillVTsafHmpRalllfrkag...apt............psaealsaseesalraalrEylg 131
                     +    ++lVTs + m+Rall f+++g    p+            p a++l+++e     +al+E++g
  VIMSS741860 164 raqH-YdDLILVTSSYQMKRALLDFERFGfapQPVyanrrdarlgwlPRAANLANAE-----LALHEIVG 227
                  **64.449********************98552225555555556555666666666.....9****986 PP



Or compare VIMSS741860 to CDD or PaperBLAST