PaperBLAST – Find papers about a protein or its homologs

 

Align ecocyc::EG12025-MONOMER to PF02698 (DUF218)

ecocyc::EG12025-MONOMER has 239 amino acids

Query:       DUF218  [M=132]
Accession:   PF02698.21
Description: DUF218 domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence                Description
    ------- ------ -----    ------- ------ -----   ---- --  --------                -----------
    4.4e-23   67.9   0.0    5.8e-23   67.5   0.0    1.1  1  ecocyc::EG12025-MONOMER  


Domain annotation for each sequence (and alignments):
>> ecocyc::EG12025-MONOMER  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   5.8e-23   5.8e-23       2     110 ..      47     170 ..      46     198 .. 0.81

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 5.8e-23
                   DUF218   2 aivVLGaal........evlaaRldeaaelyreg...kiivsGgggdeevseaeamarylleelgvpe.rilledksrnTyenarf 75 
                              + vVLG+a         ++ ++R++ a++ y+ g   ++++sG+++ ++++e  +m++ l++ +gv++ +i+l+ ++  T +++++
  ecocyc::EG12025-MONOMER  47 VGVVLGTAKyyrtgvinQYYRYRIQGAINAYNSGkvnYLLLSGDNALQSYNEPMTMRKDLIA-AGVDPsDIVLDYAGFRTLDSIVR 131
                              569***444566667998999*************7666*****97779*************6.****66***************** PP

                   DUF218  76 skell.gkrvllVTsafHmpRalllfrkag.....aptllp 110
                              +++++  + ++++T+ fH+ Ral ++ ++g     ++  +p
  ecocyc::EG12025-MONOMER 132 TRKVFdTNDFIIITQRFHCERALFIALHMGiqaqcYA--VP 170
                              *****7448********************96543321..12 PP



Or compare ecocyc::EG12025-MONOMER to CDD or PaperBLAST