PaperBLAST – Find papers about a protein or its homologs

 

Align B8F899 to PF03235 (DUF262)

B8F899 has 680 amino acids

Query:       DUF262  [M=199]
Accession:   PF03235.18
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-39  120.4   3.8    5.9e-39  120.4   3.8    3.9  3  B8F899    


Domain annotation for each sequence (and alignments):
>> B8F899  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.4   3.8   5.9e-39   5.9e-39       1     198 [.       8     221 ..       8     222 .. 0.72
   2 ?   -7.8  12.5         1         1      82     141 ..     429     487 ..     226     509 .. 0.80
   3 ?   -5.6  13.4         1         1      21     151 ..     428     598 ..     427     679 .. 0.56

  Alignments for each domain:
  == domain 1  score: 120.4 bits;  conditional E-value: 5.9e-39
  DUF262   1 ledllskkksgfliPdyQRgyvWdeeqvedLiedike......lrgyplGsivlw...keaede.dgkyeviDGQQRltTltlllka..........leed.. 81 
             + d+l++ k +f+iP yQR+y W+ eq+++L++di++       +++++Gsiv       ++++  +++++iDGQQRltT++l++ +             d  
  B8F899   8 ITDFLTSTKVQFTIPVYQRNYDWKVEQCQQLLNDILSigqdcdVSNHFIGSIVYIhnnGAYTSSqIKEWIIIDGQQRLTTIMLIYLVlyhltksqekN--Dla 108
             56888998988*******************************************99873344446**********************33333222220..022 PP

  DUF262  82 .........ekekeeeeklklekreedkdffekllenekeelekleklkelngkkfkdlseeekseseknlikayelikek...........aieklklveie 164
                      +k++++  klkl++++ + + +e+++++                      + +e   + ++l+++++++k+             ++kl +ve++
  B8F899 109 deinetiliNKFSSAPYKLKLKPTDNHVSAMEYIYKG----------------------NFSEGLGYFSRLVENFKYFKSCitlenldivrqGLDKLMFVEVS 189
             2222223333333444444444444444444444444......................44455888899999999998878888776544333777888888 PP

  DUF262 165 lddeddedeafeiFerlNsrGvpLsaadllkall 198
             l+    +d+ ++iFe+lNs+G+ Ls adl+++++
  B8F899 190 LE--RGKDNPQRIFESLNSTGLALSEADLIRNYI 221
             88..56679***********************98 PP

  == domain 2  score: -7.8 bits;  conditional E-value: 1
  DUF262  82 ekekeeeeklklekreedkdffekllenekeelekleklkelngkkfkdlseeeksesek 141
             +  ++++++l ++ ++ +++ f ++++n+k++le+    ++  +  ++dl++++ +  ++
  B8F899 429 NWASKNRTYLFERLENFKNKEFISIINNKKISLEHI-FPQNAGDDWYEDLDSQQYEFMQQ 487
             444455555666688888899999999999887773.44445566677775544444443 PP

  == domain 3  score: -5.6 bits;  conditional E-value: 1
  DUF262  21 yvWdeeqvedLiedike...............lrgyplGsivlw....keaede...dgkyeviDGQQRltTltlllka....................leed 81 
             y W  ++++ L+e +++                +++ ++    +    + +  e   +++ye    QQ l Tl  l                          +
  B8F899 428 YNWASKNRTYLFERLENfknkefisiinnkkiSLEHIFP----QnagdDWY--EdldSQQYEFM--QQKLHTLANLTLTgynselsnksfikkrelykdS--R 520
             677777778888777777655555555533333333333....24432333..23467777777..8999999988888888888777776666544430..1 PP

  DUF262  82 ............ekekeeeeklklekreedkdffekllenekeelek.leklkelngkkfkdlseeekseseknlikayelik 151
                           ++e+e++++        + f +++++ + e+++ +++l + n++++++l +++ ++ + +++++ el +
  B8F899 521 lwlnsslrslskWGKNEWEDRFT-----LLSERFLNIWKQPEYEEQDsEINLMDVNDLTYRKLISAQFQDIQLEVNNVTELYR 598
             34444443333222233444443.....4467777777777777777799999999999999955554444444444433333 PP



Or compare B8F899 to CDD or PaperBLAST