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Align VIMSS143272 to PF03235 (DUF262)

VIMSS143272 has 571 amino acids

Query:       DUF262  [M=199]
Accession:   PF03235.18
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.6e-43  133.0   0.2    7.6e-43  133.0   0.2    2.7  3  VIMSS143272  


Domain annotation for each sequence (and alignments):
>> VIMSS143272  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.0   0.2   7.6e-43   7.6e-43       4     198 ..      14     242 ..      11     243 .. 0.70
   2 ?    0.1   0.2     0.042     0.042      96     115 ..     305     324 ..     250     411 .. 0.63
   3 ?   -1.2   0.3       0.1       0.1     110     150 ..     516     558 ..     440     567 .. 0.56

  Alignments for each domain:
  == domain 1  score: 133.0 bits;  conditional E-value: 7.6e-43
       DUF262   4 llskkksg...fliPdyQRgyvWdeeqvedLiedike........lrgyplGsivlwkeaededgkyeviDGQQRltTltlllka............. 77 
                  ll +++ +   f+iP+yQR+y+Wd+e++  L++di +        +++y+lG+iv+     +e+g++eviDGQQRlt+l+lll+a             
  VIMSS143272  14 LLGNQDMQekyFIIPEYQRPYRWDTEKCAVLWSDIVDfrqsstgkNEEYFLGTIVV---CPNEKGNLEVIDGQQRLTSLLLLLRAfyrvleqtestpd 108
                  666666666779********************************************...45669*********************8888766555555 PP

       DUF262  78 ..........leed............ekekeeeeklkle.kreedkdffekllenekeelekleklkelngkkfkdlseeekseseknlikayelike 152
                                            e +++   +l  +  +e+d++ ++++l n ++++e+                       ++n+  +y ++ +
  VIMSS143272 109 taakittlksK--IapciwdvdvltaEITDRTAIRLHTQvATETDNEILHEILANGEISEEC-----------------------RSNYAVNYLYFLK 181
                  55544443330..0233333444422222222222222234456666666666666666555.......................4444444444444 PP

       DUF262 153 k.................ai.eklklveielddeddedeafeiFerlNsrGvpLsaadllkall 198
                  +                 +i +++ l+ ie d+ ++   a +iF +lN+rG+pLs+ad++ka+l
  VIMSS143272 182 QcqeyartnpmdwyhlclTIlNDCILLPIESDSLNS---ALTIFSTLNDRGLPLSDADIFKARL 242
                  44444444555555554436799*******999888...***********************98 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.042
       DUF262  96 reedkdffekllenekeele 115
                  + e+++ f++l+e + + ++
  VIMSS143272 305 QLENENLFNHLIELAGFWQD 324
                  12333333333333333332 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.1
       DUF262 110 ekeelek.leklkelngkkfkdl.seeekseseknlikayeli 150
                  ++ ++++   +  el g++ +d  +++ ++++++ + ++ +++
  VIMSS143272 516 KEQYQKSdIVEVRELAGENANDWlPSDIQKRQQQIVDRLKQFF 558
                  2222222233333333444333344444444444444444444 PP



Or compare VIMSS143272 to CDD or PaperBLAST