PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS143272 to PF03235 (DUF262)

VIMSS143272 has 571 amino acids

Query:       DUF262  [M=221]
Accession:   PF03235.14
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-41  129.6   0.3      1e-41  129.6   0.3    2.6  3  VIMSS143272  


Domain annotation for each sequence (and alignments):
>> VIMSS143272  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.6   0.3     1e-41     1e-41       3     220 ..      13     242 ..      11     243 .. 0.71
   2 ?    0.7   0.3     0.028     0.028     109     145 ..     304     334 ..     249     423 .. 0.55
   3 ?   -1.8   0.3      0.16      0.16     133     160 ..     526     554 ..     444     568 .. 0.50

  Alignments for each domain:
  == domain 1  score: 129.6 bits;  conditional E-value: 1e-41
       DUF262   3 dllskskrg...lriPdfQRpyvWeeeqveeLiedlla........lkgyplGsivlwskaadsageleviDGQQRltTltlllaa.......t..ke 80 
                  +ll +++ +   ++iP++QRpy+W++e++  L++d+++        +++y+lG+iv+     +++g+leviDGQQRlt+l lll+a       t    
  VIMSS143272  13 NLLGNQDMQekyFIIPEYQRPYRWDTEKCAVLWSDIVDfrqsstgkNEEYFLGTIVV---CPNEKGNLEVIDGQQRLTSLLLLLRAfyrvleqTesTP 107
                  5777777777878********************************************...33559*********************766554414555 PP

       DUF262  81 esekriknleaeiek..........ekeeededrlkrr.eresdkellqkllrseklsleekeelaelnsltkkdlakeekrneeknlikayevieei 167
                    +++i +l+ +i +          e ++   +rl  +  +e+d+e l+++l + + s                       ++ ++n+  +y ++ ++
  VIMSS143272 108 DTAAKITTLKSKIAPciwdvdvltaEITDRTAIRLHTQvATETDNEILHEILANGEIS-----------------------EECRSNYAVNYLYFLKQ 182
                  5556666666666666555554433222222222222223445555555555555554.......................45556666666666666 PP

       DUF262 168 lksa..........llsalktklslieieleseddedqayeiFerlNsrGvpLtasellkall 220
                  ++++          l  ++ +++ l+ ie +s ++   a +iF +lN+rG+pL++++++ka+l
  VIMSS143272 183 CQEYartnpmdwyhLCLTILNDCILLPIESDSLNS---ALTIFSTLNDRGLPLSDADIFKARL 242
                  66655666666566555566777777777777666...***********************97 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.028
       DUF262 109 eresdkellqkllrseklsleekeelaelnsltkkdl 145
                  ++ ++++l+++l++  ++ +  +      ns+t++d+
  VIMSS143272 304 KQLENENLFNHLIELAGFWQDIN------NSKTNQDV 334
                  11133333333333333332221......12222222 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.16
       DUF262 133 elaelnsltkkdl.akeekrneeknlika 160
                  e  el + + +d  +++ ++++++ + ++
  VIMSS143272 526 EVRELAGENANDWlPSDIQKRQQQIVDRL 554
                  12222222222222333333333333333 PP



Or compare VIMSS143272 to CDD or PaperBLAST