PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS156538 to PF03235 (DUF262)

VIMSS156538 has 553 amino acids

Query:       DUF262  [M=199]
Accession:   PF03235.18
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-41  129.0   8.1    1.3e-41  129.0   8.1    2.9  2  VIMSS156538  


Domain annotation for each sequence (and alignments):
>> VIMSS156538  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.0   8.1   1.3e-41   1.3e-41      11     199 .]      18     239 ..       8     239 .. 0.76
   2 ?   -6.6   9.0         1         1      83     127 ..     385     430 ..     248     545 .. 0.65

  Alignments for each domain:
  == domain 1  score: 129.0 bits;  conditional E-value: 1.3e-41
       DUF262  11 g.fliPdyQRgyvWdeeqvedLiedike.....lrgyplGsivlwkeaededgkyeviDGQQRltTltlllka....................leed. 81 
                  + ++iP+yQR+y+W+e + edL+ d+ +      +++++G+iv+   ++++++ + +iDGQQR++T +++l+a                       d 
  VIMSS156538  18 NiYKIPNYQREYSWEETELEDLWMDLSQiingeTESHFFGQIVI--HVDKKEKAKLIIDGQQRTSTAVIFLAAmrelftemynagwddaqfdaQ--Di 111
                  239***********************99****99**********..67777**********************888877765555554443330..03 PP

       DUF262  82 .....ekekeeeeklklekreedkdffekllenekeelekleklkelngkkfkdlseeekseseknlikayelikek..................... 153
                        ++ + +++ kl   e dk++f++ +++ + e++ l                ++ ++s+k+++ ay+++++k                     
  VIMSS156538 112 ttkfiGRYTQTRDERKLILGENDKSYFSNRIQSVSSEQLGL----------------QKATKSQKRINFAYNYFYKKleeeinssdfledkygllktf 193
                  33444555556666666667777777777777777666654................44466666666666666666666666667666667766665 PP

       DUF262 154 ..ai.eklklveielddeddedeafeiFerlNsrGvpLsaadllkalll 199
                    ++ ek++++++e+dd+++   af iFe+lN+rG+ L++adllk++l+
  VIMSS156538 194 fsTFtEKCSVMFVETDDFNE---AFIIFETLNARGKDLETADLLKNHLF 239
                  654589*********98888...************************97 PP

  == domain 2  score: -6.6 bits;  conditional E-value: 1
       DUF262  83 kekeeeeklklekreedkdffekllenekeelek.leklkelngkk 127
                  k+++e +k+ ++ ++e  + ++++++  +++ +  +  l++++++k
  VIMSS156538 385 KYETEFSKIAFKIYQEEVESVTEIINLIRTNIIAdDVFLNNFSSFK 430
                  4444444444444444444444444444444333222222222211 PP



Or compare VIMSS156538 to CDD or PaperBLAST