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Align VIMSS18846 to PF03235 (DUF262)

VIMSS18846 has 578 amino acids

Query:       DUF262  [M=199]
Accession:   PF03235.18
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-40  125.9   8.3    1.2e-40  125.9   8.3    3.0  2  VIMSS18846  


Domain annotation for each sequence (and alignments):
>> VIMSS18846  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.9   8.3   1.2e-40   1.2e-40       3     198 ..      14     235 ..      12     236 .. 0.75
   2 ?   -6.6   8.5         1         1      90      90 ..     474     474 ..     266     576 .. 0.64

  Alignments for each domain:
  == domain 1  score: 125.9 bits;  conditional E-value: 1.2e-40
      DUF262   3 dllskkksgfliPdyQRgyvWdeeqvedLiedike......lrgyplGsivlwkeaededgkyeviDGQQRltTltlllka....lee.d...ekekee 87 
                 ++l +++  +++PdyQR+yvWd+++   Li+d+        + +y++Gsiv+   ++++d++++v+DGQQRlt++++l +     + + +   e+++ +
  VIMSS18846  14 QILVDRDYFYQVPDYQRPYVWDKDHLGALIDDLVGsytnnrEDEYFCGSIVI--VENQKDKRWDVVDGQQRLTSFIILACTilrlY-KhSlgqESKDFI 109
                 6666666668***********************99*****************..66777*********************977641.231344444444 PP

      DUF262  88 eeklkle.kreedkdffekllenekeelek.leklkelngkkfkdlseeekseseknlikayelikek..................ai.eklklveiel 165
                 e+++  +  +e+ + +f +  +++++ ++  l++l+++++ k+++l++   + +e++++++  ++ke                   ++ e++ l++i +
  VIMSS18846 110 EDSIYDRyDKEKERLKFLTAQNYNSIFENTvLNHLEFEDNIKKSELNK---KFEENTYLRNAYYFKELlnesvengsisdiddfvkWFyEHIVLTRIIC 205
                 444433334444444444444444444444466666666666666644...667777777777777778888888888888887754468999999999 PP

      DUF262 166 ddeddedeafeiFerlNsrGvpLsaadllkall 198
                  ++d+   a +iF++lN+rG pLs+ d+lk+ l
  VIMSS18846 206 FEQDS---AMQIFQVLNDRGQPLSPIDILKSSL 235
                 97666...**********************987 PP

  == domain 2  score: -6.6 bits;  conditional E-value: 1
      DUF262  90 k 90 
                 +
  VIMSS18846 474 Q 474
                 2 PP



Or compare VIMSS18846 to CDD or PaperBLAST