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Align VIMSS18932 to PF03235 (DUF262)

VIMSS18932 has 658 amino acids

Query:       DUF262  [M=199]
Accession:   PF03235.18
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-28   83.9   5.3    8.7e-28   83.9   5.3    4.6  4  VIMSS18932  


Domain annotation for each sequence (and alignments):
>> VIMSS18932  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   5.3   8.7e-28   8.7e-28      39     198 ..       2     172 ..       1     173 [. 0.68
   2 ?    1.5   2.0     0.015     0.015      94     171 ..     194     264 ..     175     276 .. 0.58
   3 ?   -4.1   5.9      0.77      0.77     133     166 ..     355     385 ..     322     478 .. 0.52
   4 ?   -7.1  15.3         1         1      81     182 ..     514     599 ..     423     612 .. 0.54

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 8.7e-28
      DUF262  39 rgyplGsivlw.keaededgkyeviDGQQRltTltlllka............leedekekeeeeklklekreedkdffekllenekeelekleklkeln 124
                 +g+++Gsi+ + + ++ +++++ +iDGQQRltT+tlll a               +++ ke+e++l +++++ dk+f   l e++k++l++l+++++++
  VIMSS18932   2 NGHFIGSILYVlDSNTHSNNTLLIIDGQQRLTTITLLLIAlrnhlseeveilE--KFSRKEIESYLINSNKDGDKKFRLILSESDKDTLLSLIDKNKRK 98 
                 69********86555555**********************7776655443320..24444444444444555555555555555555555533333332 PP

      DUF262 125 gkkfkdlseeekseseknlikayelikek..........ai...eklklveielddeddedeafeiFerlNsrGvpLsaadllkall 198
                             se   ++++++el++++          ++   +kl +v+i+ld+   +d+ + iFe++Ns+ ++L+++dl+++++
  VIMSS18932  99 -----------PSEPSVKIVENFELFEKWisentdkletIFkglKKLMIVWISLDK--GKDDPQLIFESMNSKDIELTQTDLIRNYI 172
                 ...........255555666666666666666666666511455889********5..5669***********************97 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.015
      DUF262  94 ekreedkdffekllenekeelekleklkelngkkfkdlseeekseseknlikayelikekaieklklveielddedde 171
                 e+ e+++  f++++++  + ++ +++++++  + fkd+ +++  e e+ l+++ ++         ++ +i +++edd+
  VIMSS18932 194 ERFEQNETLFNRFVRHYLTIKIGKIPNEKRVYEAFKDYRQKKGIEIEDLLKDLQKYCG-------YFCQIAFKKEDDK 264
                 3445666777777777777777766666666666666644444444444444444443.......3555555555554 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 0.77
      DUF262 133 eeekseseknlikayelikekaieklklveield 166
                 e+++  ++++++k++++i+ +   k+k  +++l+
  VIMSS18932 355 EKQRFPNNDEFKKLFITIDFY---KFKKNKYFLE 385
                 333333333333333333321...1111111111 PP

  == domain 4  score: -7.1 bits;  conditional E-value: 1
      DUF262  81 d..ekekeeeeklklekreedkdffekllenekeelekleklkelngkkfkdlseeekseseknlikayelikekaieklklveielddeddedeafei 177
                 +  +kek+e+e++kl+k+++  d  ++ +++++ e      l +   +k k l+e+  +++++++i ay++       k+++v i+++     ++  ++
  VIMSS18932 514 KkeKKEKKEKEEYKLKKEKKVYDLSSYKFSSDSRE------LFDILREKIKALDERITEKFNQKYI-AYKFC------KISFVDIVVQ-----EKGLKL 594
                 01122222222333332222222222222222222......2222222233332222222222222.22222......2344444444.....335666 PP

      DUF262 178 FerlN 182
                 + ++N
  VIMSS18932 595 YLKMN 599
                 66665 PP



Or compare VIMSS18932 to CDD or PaperBLAST