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Align VIMSS260588 to PF03235 (DUF262)

VIMSS260588 has 608 amino acids

Query:       DUF262  [M=221]
Accession:   PF03235.14
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-31   95.4   4.5      3e-31   95.4   4.5    3.3  3  VIMSS260588  


Domain annotation for each sequence (and alignments):
>> VIMSS260588  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   4.5     3e-31     3e-31      12     218 ..      17     211 ..       6     213 .. 0.85
   2 !    2.6   8.6    0.0073    0.0073      81     220 ..     335     456 ..     275     457 .. 0.56
   3 ?   -2.5   1.2      0.27      0.27     103     138 ..     476     511 ..     458     591 .. 0.49

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 3e-31
       DUF262  12 lriPdfQRpyvWeeeqveeLiedllalkgyplGsivlwskaadsageleviDGQQRltTltlllaatkeesekriknleaeiekekeeededrlkrre 109
                  l++P fQR  vW+++q +e+++ l  + g+p+Gsi+l+  + ++++++ +iDG QR +T++ ++++    ++ ++++++ +i  e+++  ++++k + 
  VIMSS260588  17 LKLPTFQRALVWSNNQKQEFFSTL--KDGFPFGSILLY--EYENDNKYSLIDGLQRYSTMVDFMEN--PTNYIEFEDFTLKIA-ELYKGASESTKAEV 107
                  799*********************..***********4..35569*********************..777777777777777.577889999999** PP

       DUF262 110 resdkellqkllrseklsleekeelaelnsltkkdl....akeekrneeknlikayevieeilksallsalktklslieieleseddedqayeiFerl 203
                   +++++ l k+++++ +s +e+++ +el ++  +++    + + +++  +   +++ +++++l+         ++++  i++e   +e + +e+F+rl
  VIMSS260588 108 VNYAEDILLKIIEKYIDSTKENVKVNELAKKMVDKFpvlgETDIRDEITQIQSDVITYFNNQLD-------ISNVKIPCIFFE--GEETELAEVFQRL 196
                  **************************99999999998886666666666666777777777433.......578899999999..77889******** PP

       DUF262 204 NsrGvpLtasellka 218
                  Ns+G++L+++  + a
  VIMSS260588 197 NSGGKKLSKYQVFAA 211
                  *********998876 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.0073
       DUF262  81 esekriknleaeiek..ekeeededrlkrreresdkellqkllrseklsleekeelaelnsltkkdlakeekrneeknlikayevieeilksallsal 176
                  +++k i+n  +e++    +  ed+ ++k+ +r +  +++++l+ s++  +++++++++  ++tk+  ++++   ++  ++++y+vi+           
  VIMSS260588 335 KIYKIINNKFKEAFSmvVSSREDKYETKSFTRLQIMSFFSSLWISSYSIELDENKNTFSIKQTKSLKKNQQVILSNIIIYAIYDVIR----------- 421
                  233333333333333332222333333444444555555555555555555433333322222222222222222222233333333........... PP

       DUF262 177 ktklslieieleseddedqayeiFerlNsrGvpLtasellkall 220
                           + +  + +++  +i+++ N+r ++  a e ++++l
  VIMSS260588 422 --------KYWSG-TGDRKLMDIYISQNNRYLKPLAKEVFRNEL 456
                  ........33333.66699********************99987 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.27
       DUF262 103 drlkrreresdkellqkllrseklsleekeelaeln 138
                  + +   + ++ ++++++l+++ + + +  ++l++l 
  VIMSS260588 476 KMIITFIANKFRSFYSSLNDNLDYEHIFSRKLYKLH 511
                  333333444444444444444444444444433333 PP



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