PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS27426 to PF03235 (DUF262)

VIMSS27426 has 683 amino acids

Query:       DUF262  [M=199]
Accession:   PF03235.18
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-37  114.1   5.0      5e-37  114.1   5.0    2.4  2  VIMSS27426  


Domain annotation for each sequence (and alignments):
>> VIMSS27426  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.1   5.0     5e-37     5e-37       9     199 .]      16     218 ..       8     218 .. 0.79
   2 ?   -1.4   0.6      0.12      0.12     108     108 ..     559     559 ..     424     630 .. 0.61

  Alignments for each domain:
  == domain 1  score: 114.1 bits;  conditional E-value: 5e-37
      DUF262   9 ksgfliPdyQRgyvWdeeqvedLiedike....lrgyplGsivlw.....keaede...dgkyeviDGQQRltTltlllka.........leed....e 82 
                    f iP yQR+y W+ee++e+L++di +    ++ +++Gsi        +  e++    +++ +iDGQQR+tT++lllka         +  +     
  VIMSS27426  16 GTIFSIPVYQRNYTWEEENCEKLLQDIVNisqnKKTHFMGSITYIlhlidD--EKSlrqLQEFVIIDGQQRITTIMLLLKAietkiqnegI--KkeidG 110
                 3339****************************99**********9*99752..333357**********************7666555542..044455 PP

      DUF262  83 kekeeeeklklekreedkdffekllenekeelekleklkelngkkfkdlseeekseseknlikayelikekaieklklveielddeddedeafeiFerl 181
                   +   ++l+l++ ++dk+ f+ +++n++ e +   + k+ +++  k+l  ++  ++  ++ ++y ++       lk+v i l+    ed+ + +Fe++
  VIMSS27426 111 LLNLSGQRLRLKPIKSDKEAFDLVMQNRSHEIQGVSHIKNNYKFFTKEL--DNYISKGYRIEEIYGAFLW-----LKIVAIGLE--LGEDDPQVVFESI 200
                 666788999********************99988555555555555555..3345555556666666655.....899999999..66679******** PP

      DUF262 182 NsrGvpLsaadllkalll 199
                 N++Gv+L+  dl++++l+
  VIMSS27426 201 NATGVQLKGLDLIRNYLM 218
                 ***************985 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.12
      DUF262 108 e 108
                 +
  VIMSS27426 559 K 559
                 1 PP



Or compare VIMSS27426 to CDD or PaperBLAST