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Align VIMSS307154 to PF03235 (DUF262)

VIMSS307154 has 557 amino acids

Query:       DUF262  [M=199]
Accession:   PF03235.18
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-45  142.1   7.6    1.3e-45  142.1   7.6    2.3  2  VIMSS307154  


Domain annotation for each sequence (and alignments):
>> VIMSS307154  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.1   7.6   1.3e-45   1.3e-45       1     199 []      15     226 ..      15     226 .. 0.78
   2 ?   -2.1   2.6      0.19      0.19     134     134 ..     443     443 ..     233     528 .. 0.61

  Alignments for each domain:
  == domain 1  score: 142.1 bits;  conditional E-value: 1.3e-45
       DUF262   1 ledllskkksgfliPdyQRgyvWdeeqvedLiedike.....lrgyplGsivlwkeaededgkyeviDGQQRltTltlllkalee....d.ekekeee 88 
                  ++d+l+++k+ f+iP+yQR+y+W+ ++ e+Li+di++     +++y++Gs+++    ++++++yev+DGQQRltTl++++++l++    +   +++ +
  VIMSS307154  15 VQDILTENKK-FIIPSYQRPYSWTVDNAEQLIDDIYKssqseENEYFIGSMIC---INKGQNQYEVVDGQQRLTTLSIIVSELKKiipiQgI-KDDLQ 107
                  5789999998.9*****************************************...7788**********************5545433132.22233 PP

       DUF262  89 eklklekreedkdffekllenekeelek.leklkelngkkfkdlseeekseseknlikayelikek..............ai.eklklveielddedd 170
                  +++     ++d+ +  +l+  +ke+++    +l     +++kd+++e+ s++e  +i++ e+i+++              +i +++++v++++dd+++
  VIMSS307154 108 KRVLPIDVYSDETDEPRLIVRKKEYDLYkYYIL-----QDSKDYKPEKPSDTELVFISNAETIRDYllrlsvdelkllakYIlQNVYIVFVQTDDFAS 200
                  333333333333333333333333332212222.....2334556666699999999999999999999*****999998779***********9999 PP

       DUF262 171 edeafeiFerlNsrGvpLsaadllkalll 199
                      f++F++lNsrG+pLs+adllk+ l+
  VIMSS307154 201 ---SFRLFNVLNSRGLPLSNADLLKNALF 226
                  ...***********************997 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.19
       DUF262 134 e 134
                  e
  VIMSS307154 443 E 443
                  1 PP



Or compare VIMSS307154 to CDD or PaperBLAST