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Align VIMSS45872 to PF03235 (DUF262)

VIMSS45872 has 971 amino acids

Query:       DUF262  [M=221]
Accession:   PF03235.14
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-35  109.9  15.3    1.1e-35  109.9  15.3    6.6  4  VIMSS45872  


Domain annotation for each sequence (and alignments):
>> VIMSS45872  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -25.1  33.3         1         1     119     123 ..     149     153 ..      10     302 .. 0.54
   2 !  109.9  15.3   1.1e-35   1.1e-35       5     220 ..     312     526 ..     307     527 .. 0.81
   3 ?  -24.6  33.9         1         1      92     172 ..     542     661 ..     529     856 .. 0.75
   4 ?   -4.5  10.8         1         1      81     132 ..     897     943 ..     797     967 .. 0.58

  Alignments for each domain:
  == domain 1  score: -25.1 bits;  conditional E-value: 1
      DUF262 119 kllrs 123
                 +++ s
  VIMSS45872 149 TIFLS 153
                 11111 PP

  == domain 2  score: 109.9 bits;  conditional E-value: 1.1e-35
      DUF262   5 lskskrglriPdfQRpyvWeeeqveeLiedlla......lkgyplGsivlwskaadsageleviDGQQRltTltlllaatkeesekriknleaeiekek 97 
                  +++++++ iP fQR+yvW+ +++e+L+ed+++      +++++lGsi+ + ++++s ++ ++iDGQQRltTl+l+ +a             + i+ ++
  VIMSS45872 312 NKNETIKMSIPVFQRNYVWTIDNIEKLLEDINDisnkqnNENHFLGSIISVLVKEESIDNIQIIDGQQRLTTLFLITKA-------------FIIFLYN 397
                 444444489**********************99*****************9999999******************9999.............3334344 PP

      DUF262  98 eeededrlkrreresdkellqkllrseklslee.keelaelnsltkkdlakeekrneeknlikayevieeilksa.........llsalktklslieie 186
                 + e+ ++++ ++ ++  +l + +++ e   +   ++  + ++++ k++l+++e +n+++ ++ +++ i e+++++         +++al+++l l  ++
  VIMSS45872 398 NREEITKFTNEQIKQLSHLKDIFFNREFIIDRFsRIGGNPDYEALKQILSNDELDNKNNHIFMNLKDIVEWFEEKpkefkewanFANALFNNLILNLVI 496
                 445555555555555555555555555555555455555556677788899999********************9********9999998888888888 PP

      DUF262 187 leseddedqayeiFerlNsrGvpLtasellkall 220
                 l++ d+    ++ Fe+lN++ ++L+a ellk+++
  VIMSS45872 497 LKNVDE----FKTFESLNTNAKKLNAIELLKNKF 526
                 887666....**********************98 PP

  == domain 3  score: -24.6 bits;  conditional E-value: 1
      DUF262  92 eiek.........ekeeededrlkrreresdkellqkllrseklsleekeelaelnsltkkdl...........akeekrneeknlikayevieeilks 170
                 e+++         +++++de+ ++++++++  + l+ l+  +++ l+       + + +k+d              ++k ++++n ++ ++++ ++++ 
  VIMSS45872 542 EFQQkyndlitkkFLLKKDENIIEVKRFNEFVDSLSALNLCKDEDLKR------FEKNDKDDEyynkswffiieIINKKFTLKNNWKACLKYFSKYIDI 634
                 222223222223545555555555555555555555555554444333......222222222333346788888888899999999999999998888 PP

      DUF262 171 a.........................l 172
                 +                         l
  VIMSS45872 635 YndltikdkftnnncnfylisdylliL 661
                 877765555555555555444444331 PP

  == domain 4  score: -4.5 bits;  conditional E-value: 1
      DUF262  81 esekriknleaeiekekeeededrlkrreresdkellqkllrseklsleeke 132
                  +e++i +l++e++k     ++++lk+++ + +++ +++ l s kls++e+ 
  VIMSS45872 897 LNEEQITKLYNEFTK-----INEKLKSNKIDVNEDVFKEALMSLKLSDKEEL 943
                 333444444444443.....33444555555555555555555555544443 PP



Or compare VIMSS45872 to CDD or PaperBLAST