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Align VIMSS45959 to PF03235 (DUF262)

VIMSS45959 has 583 amino acids

Query:       DUF262  [M=221]
Accession:   PF03235.14
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-42  130.9  13.9    4.3e-42  130.9  13.9    3.0  3  VIMSS45959  


Domain annotation for each sequence (and alignments):
>> VIMSS45959  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.9  13.9   4.3e-42   4.3e-42       2     218 ..      11     257 ..      10     260 .. 0.89
   2 ?   -0.6   0.9     0.068     0.068     146     172 ..     302     334 ..     261     379 .. 0.57
   3 ?   -0.6   3.1     0.067     0.067      95     159 ..     418     497 ..     383     526 .. 0.61

  Alignments for each domain:
  == domain 1  score: 130.9 bits;  conditional E-value: 4.3e-42
      DUF262   2 edllskskrg.lriPdfQRpyvWeeeqveeLiedllalkgyplGsivlw.............................skaadsageleviDGQQRltT 70 
                 ++ ++++k++ + +P+fQR+yvWe+ q+eeL+++l   +gyp+ s+++w                              + ++ ++ + ++DGQQRlt+
  VIMSS45959  11 NEAMQRIKNNeYLLPAFQREYVWEPWQIEELFDSL--IRGYPISSMLFWkvkdesktawkfyrfleyyresyhthndyFNTSNHKDFYAILDGQQRLTS 107
                 56677778778************************..*************************************9986334444*************** PP

      DUF262  71 ltlllaa..................t........keesekriknleaeiek.ekeeededrlkrreresdkellqkllrseklsleekeelaelnsltk 142
                 l+ +l +                  +         ++++ + +n+e+e+    k+e++e+++++++ ++++ ++q+l+++++ +  +  ++++ln    
  VIMSS45959 108 LYFALFGnydihrsynkwenndryfKichfyfnlTQSKKPENENIEYEFLWlDKLETKEQNIYIDKYQQKWFKCQYLYQYDSGRVRKIAKEFNLN---- 202
                 *******999988887777665555056667777777888888888888889999******************************9998888888.... PP

      DUF262 143 kdlakeekrneeknlikayevieeilksallsalktklslieieleseddedqayeiFerlNsrGvpLtasellka 218
                         +nee++l  +++ i++              +li+++le+e+d+d+a +iF+r+Ns+G+pL+ s++l +
  VIMSS45959 203 --------ENEEDRLDLLHQKIFD-------------KNLINFYLEEEQDPDKAVNIFIRINSNGEPLDYSDILFS 257
                 ........8999999999999998.............59**********************************987 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.068
      DUF262 146 akeekrneeknlikayevieeilksa......l 172
                  k + + ++kn+i+ +e  +e +k+a      l
  VIMSS45959 302 IKFQINSFDKNFIESIEAKWEGIKNAfietfrL 334
                 333445677777777777777777774444441 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.067
      DUF262  95 k.......ekeeededrlkrreresdkellqkllrseklsleekeelaeln.sltkkdl.......akeekrneeknlik 159
                         + +ee+e++ k+ ++ + + l ++ ++ +k+s+e    l+ l+ +l++k+         +e   +e+++l+k
  VIMSS45959 418 FfdreielFPLEEIEKEAKYIQTIDEEYLENNVIECRKNSPEAFAVLSLLYpNLDYKNNnfhkdhlHPESAYKEYEKLYK 497
                 25566666788888999999999999999999999999988884444433335555555444433333222222222222 PP



Or compare VIMSS45959 to CDD or PaperBLAST