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Align VIMSS45959 to PF03235 (DUF262)

VIMSS45959 has 583 amino acids

Query:       DUF262  [M=199]
Accession:   PF03235.18
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-39  119.8  13.7    8.5e-39  119.8  13.7    3.1  3  VIMSS45959  


Domain annotation for each sequence (and alignments):
>> VIMSS45959  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.8  13.7   8.5e-39   8.5e-39       2     196 ..      11     257 ..      10     260 .. 0.87
   2 ?   -1.3   0.8      0.11      0.11     126     151 ..     311     336 ..     262     382 .. 0.48
   3 ?   -3.2   3.6      0.43      0.43     136     136 ..     481     481 ..     398     578 .. 0.55

  Alignments for each domain:
  == domain 1  score: 119.8 bits;  conditional E-value: 8.5e-39
      DUF262   2 edllskkksg.fliPdyQRgyvWdeeqvedLiedikelrgyplGsivlw.............................keaededgkyeviDGQQRltT 70 
                 ++ ++++k++ +l+P +QR+yvW++ q+e+L++++  +rgyp+ s+++w                              + +++++ y ++DGQQRlt+
  VIMSS45959  11 NEAMQRIKNNeYLLPAFQREYVWEPWQIEELFDSL--IRGYPISSMLFWkvkdesktawkfyrfleyyresyhthndyFNTSNHKDFYAILDGQQRLTS 107
                 66778888889************************..************************************99876434445*************** PP

      DUF262  71 ltlllka.....................................leed......ekekeeeeklklekreedkdffekllenekeelekleklkelngk 126
                 l+ +l++                                     +  +       k +++e+++ ++k++++++++++l+++++ +  k  k+ +ln  
  VIMSS45959 108 LYFALFGnydihrsynkwenndryfkichfyfnltqskkpenenI--EyeflwlDKLETKEQNIYIDKYQQKWFKCQYLYQYDSGRVRKIAKEFNLN-- 202
                 *******99999999999999999888888777776666655552..04455567778899999999999999999999999999999988888888.. PP

      DUF262 127 kfkdlseeekseseknlikayelikekaieklklveielddeddedeafeiFerlNsrGvpLsaadllka 196
                           +++e++l  +++ i +      +l++++l++e+d+d+a +iF+r+Ns+G+pL+ +d+l +
  VIMSS45959 203 ----------ENEEDRLDLLHQKIFD-----KNLINFYLEEEQDPDKAVNIFIRINSNGEPLDYSDILFS 257
                 ..........7888888888887777.....69**********************************976 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.11
      DUF262 126 kkfkdlseeekseseknlikayelik 151
                 k+f +  e++ +  ++ +i++++l++
  VIMSS45959 311 KNFIESIEAKWEGIKNAFIETFRLLR 336
                 11222233333333333333333333 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 0.43
      DUF262 136 k 136
                 +
  VIMSS45959 481 D 481
                 1 PP



Or compare VIMSS45959 to CDD or PaperBLAST