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Align VIMSS55555 to PF03235 (DUF262)

VIMSS55555 has 638 amino acids

Query:       DUF262  [M=221]
Accession:   PF03235.14
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-20   60.6   1.5    1.4e-20   60.6   1.5    3.8  3  VIMSS55555  


Domain annotation for each sequence (and alignments):
>> VIMSS55555  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   2.0     0.098     0.098     152     207 ..     127     189 ..      55     213 .. 0.52
   2 !   60.6   1.5   1.4e-20   1.4e-20      13     220 ..     270     411 ..     260     412 .. 0.86
   3 ?   -0.4   0.2      0.06      0.06     118     171 ..     495     544 ..     455     598 .. 0.53

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.098
      DUF262 152 neeknlikayevieeilksa.......llsalktklslieieleseddedqayeiFerlNsrG 207
                  e + ++++++  +++  s+           lk+kl+ i+  +  e+d d++++i e++ +  
  VIMSS55555 127 SETREIKRKIDRYRDFDVSQfyelhreQTIQLKHKLDSIFTKYPGESDVDAVKDIIEKIQELE 189
                 111111111111111111111111211111112334444445555566666666665554444 PP

  == domain 2  score: 60.6 bits;  conditional E-value: 1.4e-20
      DUF262  13 riPdfQRpyv.WeeeqveeLiedllalkgyplGsivlw....skaads.ageleviDGQQRltTltlllaatkeesekriknleaeiekekeeededrl 105
                  +P++QR+ + W  + + +Lie++  l+g pl+ +++     ++a+++ +  + viDG QR+tTl+ ++ +                            
  VIMSS55555 270 LTPEYQRKDRiWPIKDRARLIESI--LLGLPLPVFYFAeranKDAESEvDFDWVVIDGLQRTTTLVDFVQG---------------------------- 338
                 79*******99*************..************99865555558**********************............................ PP

      DUF262 106 krreresdkellqkllrseklsleekeelaelnsltkkdlakeekrneeknlikayevieeilksallsalktklslieieleseddedqayeiFerlN 204
                                    k++l+++++l +  + ++kdl+++e+r+ +++ i  + +  +                        d+e+ + e+F r+N
  VIMSS55555 339 -------------------KFALKDLNQLPKYDNCYFKDLPRKEQRKIREYQIHGHLIQVS-----------------------NDSEEMIRELFHRIN 395
                 ...................67777777888888999****888888877777777666654.......................388999********* PP

      DUF262 205 srGvpLtasellkall 220
                 + G+ L+ +e++ al+
  VIMSS55555 396 TYGKNLSYQEIRSALY 411
                 ************9987 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.06
      DUF262 118 qkllrseklsleekeelaelnsltkkdlakeekrneeknlikayevieeilksa 171
                  ++++++  + ++ ++  +    + + ++ke+k +++k l+++++ i+ +++++
  VIMSS55555 495 FQIIDYKLKESLKTISVIF----EDDAFKKEPKGKLNKILFELLVSIFAMMSDE 544
                 3333333222222111111....1122244444555555555555555444443 PP



Or compare VIMSS55555 to CDD or PaperBLAST