PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS5915850 to PF03235 (DUF262)

VIMSS5915850 has 811 amino acids

Query:       DUF262  [M=221]
Accession:   PF03235.14
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.8e-41  126.8   2.3    1.3e-40  126.1   0.7    2.3  2  VIMSS5915850  


Domain annotation for each sequence (and alignments):
>> VIMSS5915850  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.1   0.7   1.3e-40   1.3e-40       1     220 [.       8     221 ..       8     222 .. 0.78
   2 ?   -3.3   0.0      0.47      0.47     110     130 ..     267     287 ..     229     308 .. 0.59

  Alignments for each domain:
  == domain 1  score: 126.1 bits;  conditional E-value: 1.3e-40
        DUF262   1 ledllskskrglriPdfQRpyvWeeeqveeLiedlla.....lkgyplGsivlwskaadsageleviDGQQRltTltlllaatkeesekriknleae 92 
                   +++++++++r+l+iP +QR+y W+e+q+++L++dl +     ++ +++G++v    + +++ ++ viDGQQRltT++l++ a           l+  
  VIMSS5915850   8 ITKVYDGKHRTLEIPVYQRNYDWTEKQCSRLFDDLSEvvkenHRQHFFGAVVG---KPQGSWTWVVIDGQQRLTTISLFMLA-----------LVHS 90 
                   567888899989***********************99****************...7777**********************...........3333 PP

        DUF262  93 iekekeeededrlkrreresdkellqkllrseklslee.keelaelnsltkkdlakeekrneeknlikayevieeilksa......llsalktklsl 182
                   ++  + ee e +  ++++       ++l ++++ +l+  +++ +++n++++k + +e +  e +nl ++y+++++ lk        l++a+ +kl +
  VIMSS5915850  91 LRASEVEEGEFNAGYNIDLATLIEDDYLRSGNEGNLKFkLKPVKNDNEAYQKLFGPESEFIESSNLTANYRYFRNVLKATdltaaqLWEAI-EKLRV 186
                   33333333333333333333333333333333333333355566666677777788899****************9999899999988888.99999 PP

        DUF262 183 ieieleseddedqayeiFerlNsrGvpLtasellkall 220
                   + + le+ dd    ++iFe+lNs+G++L+ ++ +++l+
  VIMSS5915850 187 MYLDLEEFDD---PQRIFESLNSTGLELSEADKVRNLV 221
                   9999998888...**********************987 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.47
        DUF262 110 resdkellqkllrseklslee 130
                   +++  e ++k++r++kl  e 
  VIMSS5915850 267 KQDVYEEFKKFIRNSKLPVEF 287
                   334445555555555555544 PP



Or compare VIMSS5915850 to CDD or PaperBLAST