PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS101876 to PF03458 (Gly_transporter)

VIMSS101876 has 201 amino acids

Query:       Gly_transporter  [M=78]
Accession:   PF03458.17
Description: Glycine transporter
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-43  131.3  13.6    1.4e-23   68.9   3.0    2.3  2  VIMSS101876  


Domain annotation for each sequence (and alignments):
>> VIMSS101876  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   2.9   2.9e-23   2.9e-23       2      76 ..       4      77 ..       3      79 .. 0.86
   2 !   68.9   3.0   1.4e-23   1.4e-23       2      73 ..      91     160 ..      90     164 .. 0.94

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 2.9e-23
  Gly_transporter  2 vldaiGlaafavsGalkAlrkgldlfgvvvlGvvTavgGGvlRDvllgrevPvvllreplyalaallgallvvll 76
                     +l++iG++afa+sGa++A+++++d++g+++lG+vTa+gGG +R+ l+g  + +++ ++    ++a+++++l++l+
      VIMSS101876  4 ILNIIGTIAFALSGAIVAMEEEFDILGIFILGFVTAFGGGAIRNTLIGLPIEALWGQK-PEFTCAFFAMVLIMLF 77
                     799*********************************************7555556555.6678888888887776 PP

  == domain 2  score: 68.9 bits;  conditional E-value: 1.4e-23
  Gly_transporter   2 vldaiGlaafavsGalkAlrkgldlfgvvvlGvvTavgGGvlRDvllgrevPvvllreplyalaallgallv 73 
                      + daiGlaaf+v Gal A+r + +l  v+v +v+T+ gGGv+RD+l+gr  P vl +e +ya  ++l+a++ 
      VIMSS101876  91 LTDAIGLAAFSVQGALHAVRLNQPLSAVIVTAVLTGAGGGVVRDILAGR-KPSVLRSE-IYAGWSILAAIVL 160
                      579*********************************************6.9****767.*********9986 PP



Or compare VIMSS101876 to CDD or PaperBLAST