PaperBLAST – Find papers about a protein or its homologs

 

Align reanno::pseudo3_N2E3:AO353_13110 to PF03458 (Gly_transporter)

reanno::pseudo3_N2E3:AO353_13110 has 203 amino acids

Query:       Gly_transporter  [M=78]
Accession:   PF03458.17
Description: Glycine transporter
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence                         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------                         -----------
    1.5e-49  152.1  20.0      4e-27   80.3   5.3    2.2  2  reanno::pseudo3_N2E3:AO353_13110  


Domain annotation for each sequence (and alignments):
>> reanno::pseudo3_N2E3:AO353_13110  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   5.3     4e-27     4e-27       2      77 ..       4      78 ..       3      79 .. 0.95
   2 !   77.9   6.8   2.2e-26   2.2e-26       2      76 ..      90     162 ..      89     164 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 4e-27
                   Gly_transporter  2 vldaiGlaafavsGalkAlrkgldlfgvvvlGvvTavgGGvlRDvllgrevPvvllreplyalaallgallvvlla 77
                                      +l +i++ a a++Gal A r+g+d+fgvv++++vTa+gGG +RDvllg+ +P+ ++++p y++++ ++a+l+v++a
  reanno::pseudo3_N2E3:AO353_13110  4 MLYLIAITAEAMTGALSAGRRGMDWFGVVLIACVTALGGGSVRDVLLGH-YPLTWVKHPEYLVLTSAAAMLTVFTA 78
                                      6789********************************************6.********************999975 PP

  == domain 2  score: 77.9 bits;  conditional E-value: 2.2e-26
                   Gly_transporter   2 vldaiGlaafavsGalkAlrkgldlfgvvvlGvvTavgGGvlRDvllgrevPvvllreplyalaallgallvvll 76 
                                       vlda+Gl+af+++G+++Al+ g+ ++++ v Gv+T+v+GG+lRD++++ ++P+++ re lya++++++a++++l+
  reanno::pseudo3_N2E3:AO353_13110  90 VLDAVGLVAFTLIGCMIALETGHGMLVASVSGVITGVFGGILRDIFCN-DIPLIFRRE-LYASVSFAAAWCYMLC 162
                                       89**********************************************.5*****888.*************997 PP



Or compare reanno::pseudo3_N2E3:AO353_13110 to CDD or PaperBLAST