PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10088142 to PF03478 (DUF295)

VIMSS10088142 has 353 amino acids

Query:       DUF295  [M=259]
Accession:   PF03478.22
Description: Domain of unknown function (DUF295)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-37  115.7   0.0    1.9e-37  115.4   0.0    1.1  1  VIMSS10088142  


Domain annotation for each sequence (and alignments):
>> VIMSS10088142  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.4   0.0   1.9e-37   1.9e-37       2     259 .]      54     326 ..      53     326 .. 0.80

  Alignments for each domain:
  == domain 1  score: 115.4 bits;  conditional E-value: 1.9e-37
         DUF295   2 Pwll.lpddeeedsst.lfslpd.gklyr..rlklPeg..rrrcvgssggwLltaderssnlfllnpltgarieLPplstlpve.......ellir 83 
                    Pwl+ +p+ ++ed s+ lf+ ++ +k+y+  r        + r++++sg+w+l+ d+   nl++++++++ +i+L pl+            e  ++
  VIMSS10088142  54 PWLMlFPEGDNEDGSVlLFNPEEeEKIYKtkR-----YfsGIRFLANSGKWFLLIDSL-FNLYIIDVFSENKIDLLPLEE---SlldkeesE-DLT 139
                    ****778877777777899976689***9643.....134456*************97.67*************888842...022355652.445 PP

         DUF295  84 kvvlsaspssdyvvvlisgesggklafcrsgdssWttieee......gegyedvvfhkgkfYaltntgevvvldl.gsdeplevs.....evvks. 166
                          +++ +yvvvl+++  +g++ fc++gd+++t+i+ +       +g+ d+v+ + ++Y+ t  + + +ldl +++  ++v+     +v +s 
  VIMSS10088142 140 GLLWVDEKTAEYVVVLFFNFPSGNVGFCKKGDDHYTKIPLHcgvpwrLQGLIDAVLLGYRLYIRTELSYIRILDLsTQQGFEDVNkyepfQVFSSt 235
                    5554555889***999998669*****************99*****977999***********************876777777777777666556 PP

         DUF295 167 kerkylVessGelllVrrylkk.eskrtvefeVykl.dleeeakweevesLgdralFlgsnssfsvsasdfpglkgNcIYftddk...k...eerd 254
                    ++ +++V ++Ge+llV+++l++ +  + ++f ++k  d + +   eev+sLgd+al+l  n ++ +++     + +N+IYft+     +    + d
  VIMSS10088142 236 QDCSIAVTTRGEVLLVKSILDNtTIGSHRRFCIFKNiDYN-P--QEEVDSLGDEALLL--NLGILLPS-----IAPNSIYFTRHGriyHkehFNLD 321
                    5588*******************5566689****985665.3..48************..99999876.....79*******96656515565577 PP

         DUF295 255 igvyd 259
                    ++v++
  VIMSS10088142 322 LCVFN 326
                    89987 PP



Or compare VIMSS10088142 to CDD or PaperBLAST