PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10109776 to PF03478 (DUF295)

VIMSS10109776 has 359 amino acids

Query:       DUF295  [M=259]
Accession:   PF03478.22
Description: Domain of unknown function (DUF295)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-34  103.7   0.0    8.9e-34  103.4   0.0    1.1  1  VIMSS10109776  


Domain annotation for each sequence (and alignments):
>> VIMSS10109776  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.0   8.9e-34   8.9e-34      30     243 ..      69     321 ..      40     341 .. 0.78

  Alignments for each domain:
  == domain 1  score: 103.4 bits;  conditional E-value: 8.9e-34
         DUF295  30 klPeg...rrrcvgssggwLltader.ssnlf.llnpltgar....ieLPplstlp.veellirkvvlsas.ps.sdyvvvlisgesggklafcrs 113
                    ++P +   +  ++g+s+gw++t +e+   +l+  lnp+ ++     i+LPpl tlp +++ ++++v++s+s p+ +d+vv++ +   g++l++cr+
  VIMSS10109776  69 TVPLElmkEMVMIGASHGWIATLKEDgIMRLQdDLNPVASDSdpkhIPLPPLVTLPhCQTQVVTNVAMSSSsPEhEDCVVAVKFL--GPQLSLCRP 162
                    567777776679*********9998864456668999944444446**********9997799****95554877******9998..79******* PP

         DUF295 114 g..dssWttieee.gegyedvvfh...kgkfYaltntg.evvvldl..gsdeplevs...........evvks.......ke.rkylVes..sGel 179
                    +  +s+Wt+i+ e ++ y++ v++   +g f +  + g  +  +dl   +++p+ ++           +           ++  ++lVes  ++e 
  VIMSS10109776 163 AqrNSEWTNIRIEnQCFYSSPVMFsqkDGMFRIPGSGGnLIGSWDLhkHKKKPK-IQrlrfknlpeltK---TkrellhsCCtSQHLVESttTDET 254
                    733669*****99766777666664766666665554457899**996545554.44477777774441...2556776644699****99999** PP

         DUF295 180 llVrrylkk.....eskrtvefeVykldleeeakweevesLgdralFlgsnssfsvsasdfpglkgNcI 243
                    +lVr+y k         +t+  +V+kld+e  ++ +  e++g  ++Fl++   f+v+a+++pg+ +N +
  VIMSS10109776 255 FLVRWYRKAtssgvVKMKTKAAMVFKLDEE--GNAVYTEDIGHLCIFLSKSEPFCVPANSIPGMCPNIV 321
                    ****8888899***66789*********87..467899****************************987 PP



Or compare VIMSS10109776 to CDD or PaperBLAST