PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10110124 to PF03478 (DUF295)

VIMSS10110124 has 366 amino acids

Query:       DUF295  [M=259]
Accession:   PF03478.22
Description: Domain of unknown function (DUF295)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-32   99.2   0.0      2e-32   98.9   0.0    1.1  1  VIMSS10110124  


Domain annotation for each sequence (and alignments):
>> VIMSS10110124  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   0.0     2e-32     2e-32      30     247 ..      72     332 ..      48     358 .. 0.74

  Alignments for each domain:
  == domain 1  score: 98.9 bits;  conditional E-value: 2e-32
         DUF295  30 klPeg....rrrcvgssggwLltader..ssnlf.llnpl....tgarieLPplstlp.veellirkvvlsas.ps.sdyvvvlisgesggklafc 111
                    k+P +       ++gss+gw++t  ++    +l+  lnp       +ri+LPpl tlp +++ ++++v +s+s p+ +++vv++ +   g++++fc
  VIMSS10110124  72 KVPLElvdnPMVTIGSSHGWVATLSQDdgILRLQdDLNPAasdtNPKRIPLPPLVTLPhCQTQIVTNVSMSSSsPEdENCVVAVKFL--GPQISFC 165
                    4444444445569*********76655354445556888866634456**********9997799****955549889999999888..79***** PP

         DUF295 112 rsg..dssWttieee.gegye.dvvfh.kgkfYaltntg..evvvldl...gsdeplevs..............evvkske.rkylVes..sGell 180
                    r++  +s+W++++   ++ y+  v+f  k+ ++ +  +g   +  +dl    +++p++ +              ev++s+   ++lVes  +Ge +
  VIMSS10110124 166 RPAqrNSEWINVRIAnPCFYSsRVMFSeKHDLFRIPGSGghIIASWDLhkdKHKNPKFQRlrfqnlpkltktkrEVMDSCYkSEHLVESrtTGETF 261
                    **73366899998889778862555556666888887666678899*9765444454444888888866656555555533588****999***** PP

         DUF295 181 lVrrylkk.....eskrtvefeVykldleeeakweevesLgdralFlgsnssfsvsasdfp.glkgNcIYftd 247
                    lV++y k         +t+  +V++ld e  ++ +  +++gd ++Fl++   f+vs s++p  + +N + ++d
  VIMSS10110124 262 LVKWYRKAvwrgmSKLSTKALMVFRLDDE--GNAVYTKDIGDLCIFLSKSEPFCVSLSSLPrMFFPNNVEYMD 332
                    ***9988899**9556789*******965..567899***********************7455688776666 PP



Or compare VIMSS10110124 to CDD or PaperBLAST