PaperBLAST – Find papers about a protein or its homologs

 

Align XP_011036089.1 to PF03478 (DUF295)

XP_011036089.1 has 468 amino acids

Query:       DUF295  [M=259]
Accession:   PF03478.22
Description: Domain of unknown function (DUF295)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-11   30.7   0.3    2.1e-11   30.0   0.3    1.4  1  XP_011036089.1  


Domain annotation for each sequence (and alignments):
>> XP_011036089.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.3   2.1e-11   2.1e-11       2     215 ..     170     391 ..     169     440 .. 0.72

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 2.1e-11
          DUF295   2 Pwlllpddeeedsstlfslpdgklyr.rl.klPeg.rrrcvgssggwLltaderssnlfllnpltgarieLPplstlpveellirkvvlsas.ps 92 
                     Pw    ++e+ +s ++++ + +k ++ ++  lP +     v+s gg +++ d +++n++++nplt++  eLPp s ++v++ +   + l  s  s
  XP_011036089.1 170 PWFYTIAHENVNSGAMYDPSLKKWHHpTIsYLPTKmIVLPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPPRS-VKVWSRVAVGMTLNGSaAS 263
                     777755555566777***87799999833489999955589***********88899***************986.3322223333335333235 PP

          DUF295  93 sdyvvvlisgesggklafcrsgdssWttieee.........gegy.edvvfhkgkfYaltntg.evvvldl..gsdeplevsevvks.ke..rky 171
                     + y  +++     g+  ++ s ++sWt+  ++           ++ ++ v  +g +Y+++++   +v +++  g    +  ++++ + ++  ++ 
  XP_011036089.1 264 GGYKILWVCCD--GEYEVYDSLKNSWTRPGSMpsciklplsL-NFrSQTVSLGGTLYFMRSDPeGIVSYNMvtG----VWKQSIIPApHHlsDHA 351
                     99999999984..688999999999*9976669999999953.453688888*******996625666666532....11123443354455789 PP

          DUF295 172 lVessGelllVrrylkkeskrtvefeVykldleeeakweevesL 215
                     l++++G+ +lV   +k++    + +e+ k+ l     w+ev+ +
  XP_011036089.1 352 LAQCEGRIILVGLLTKNAATCVCIWELQKMTL----LWKEVDRM 391
                     9999*******977666555556666666654....47777655 PP



Or compare XP_011036089.1 to CDD or PaperBLAST