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Align NP_001159201.1 to PF03479 (DUF296)

NP_001159201.1 has 341 amino acids

Query:       DUF296  [M=107]
Accession:   PF03479.15
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-30   92.3   0.4    1.8e-30   91.8   0.4    1.3  1  NP_001159201.1  


Domain annotation for each sequence (and alignments):
>> NP_001159201.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   0.4   1.8e-30   1.8e-30       1     105 [.     138     249 ..     138     251 .. 0.92

  Alignments for each domain:
  == domain 1  score: 91.8 bits;  conditional E-value: 1.8e-30
                     TEEEEEE-TTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEECTTT......EE-S-EEEEEEEEEEEE.......TTEEEEEEEEETTSEE CS
          DUF296   1 rphvlrlepGediveaieefarkrgiraacvlsaiGavsnvtrladgee......kllgrfeilslsGtilp.......dglHlhvslagedgqv 82 
                     r+hvl++++G+d+v++++ far+r + ++cvls+ G+v+nv   + ++       +l grfeilsl G++lp       +g  l+v+l+g++gqv
  NP_001159201.1 138 RAHVLEVAAGCDVVDSVAGFARRR-QVGVCVLSGAGSVANVC--VRQPGagagavTLPGRFEILSLCGSFLPppappaaTG--LTVYLSGGQGQV 227
                     68**********************.*****************..44444577887777**************999999888..************ PP

                     EEEEEEEE.EEEEEEEEEEEEE- CS
          DUF296  83 vgGhlaegplvaattvevvvaef 105
                     vgG +a gpl a+++v +v+a f
  NP_001159201.1 228 VGGSVA-GPLLASGPVVIVAACF 249
                     ******.*************977 PP



Or compare NP_001159201.1 to CDD or PaperBLAST