NP_173514.1 has 311 amino acids
Query: PCC [M=117]
Accession: PF03479.19
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.8e-25 75.2 0.1 3.8e-25 74.7 0.1 1.2 1 NP_173514.1
Domain annotation for each sequence (and alignments):
>> NP_173514.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 74.7 0.1 3.8e-25 3.8e-25 1 116 [. 114 235 .. 114 236 .. 0.93
Alignments for each domain:
== domain 1 score: 74.7 bits; conditional E-value: 3.8e-25
PCC 1 rvfvlrlepGedilesleefareegiraacvlsaiGavsnatlglvdgeekeye......ekellgpfEilslsGtisp......tdgepflHlhvsl 86
r +vl+++pG di+es+ ++ar++ r+++vl ++G+vsn+tl+ ++ + +l g+fEilsl+Gt++p +g l++ l
NP_173514.1 114 RSHVLEVSPGADIVESVSTYARRR-GRGVSVLGGNGTVSNVTLRQPVTPGNGGGvsggggVVTLHGRFEILSLTGTVLPppappgAGG-----LSIFL 205
68**********************.*****************99888888887788888888888*****************999889.....***** PP
PCC 87 adedgqvvgGhlveglvaattvevviaefe 116
a+ +gqvvgG +v l+a+++v +++a+f+
NP_173514.1 206 AGGQGQVVGGSVVAPLIASAPVILMAASFS 235
*************66************997 PP
Or compare NP_173514.1 to CDD or PaperBLAST