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Align NP_182067.1 to PF03479 (DUF296)

NP_182067.1 has 317 amino acids

Query:       DUF296  [M=107]
Accession:   PF03479.15
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.6e-34  103.1   0.3    8.7e-34  102.5   0.3    1.3  1  NP_182067.1  


Domain annotation for each sequence (and alignments):
>> NP_182067.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.3   8.7e-34   8.7e-34       2     106 ..     118     233 ..     117     234 .. 0.92

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 8.7e-34
                  EEEEEE-TTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEECTTT..........EE-S-EEEEEEEEEEEE.......TTEEEEEEEEETTSEE CS
       DUF296   2 phvlrlepGediveaieefarkrgiraacvlsaiGavsnvtrladgee..........kllgrfeilslsGtilp.......dglHlhvslagedgqv 82 
                   hv+++++G+d++e+++ far+r +r++cvls++Gav+nvt  + +++          +l grfeilslsG++lp       +g  l+++lag++gqv
  NP_182067.1 118 SHVMEVANGCDVMESVTVFARRR-QRGICVLSGNGAVTNVT--IRQPAsvpgggssvvNLHGRFEILSLSGSFLPppappaaSG--LTIYLAGGQGQV 210
                  7**********************.*****************..444444666888887777*****************999999..************ PP

                  EEEEEEEE.EEEEEEEEEEEEE-C CS
       DUF296  83 vgGhlaegplvaattvevvvaefe 106
                  vgG ++ gpl+a+++v +++a+f 
  NP_182067.1 211 VGGSVV-GPLMASGPVVIMAASFG 233
                  ******.***************96 PP



Or compare NP_182067.1 to CDD or PaperBLAST