PaperBLAST – Find papers about a protein or its homologs

 

Align NP_566232.1 to PF03479 (PCC)

NP_566232.1 has 315 amino acids

Query:       PCC  [M=117]
Accession:   PF03479.19
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-27   81.2   0.2    8.9e-27   80.0   0.1    1.6  2  NP_566232.1  


Domain annotation for each sequence (and alignments):
>> NP_566232.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.26      0.26      76      91 ..      26      41 ..      10      43 .. 0.75
   2 !   80.0   0.1   8.9e-27   8.9e-27       2     116 ..     109     228 ..     108     229 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.26
          PCC 76 gepflHlhvsladedg 91
                 ++p lH+++ +a ++g
  NP_566232.1 26 KKPDLHISMNMAMDSG 41
                 4599999999998766 PP

  == domain 2  score: 80.0 bits;  conditional E-value: 8.9e-27
          PCC   2 vfvlrlepGedilesleefareegiraacvlsaiGavsnatlglvdgeekeye.....ekellgpfEilslsGtisp......tdgepflHlhvslad 88 
                   +v++++ G d++e+l++far++  r++c+ls++G+v+n+tl+  ++ +            l+g+fEilsl+G+++p      + g     l+++la+
  NP_566232.1 109 SHVMEIASGTDVIETLATFARRR-QRGICILSGNGTVANVTLRQPSTAAVAAApggaaVLALQGRFEILSLTGSFLPgpappgSTG-----LTIYLAG 200
                  79*********************.*****************6666655555557777677777**************777766556.....******* PP

          PCC  89 edgqvvgGhlveg.lvaattvevviaefe 116
                   +gqvvgG +v g l+aa++v +++a+f+
  NP_566232.1 201 GQGQVVGGSVV-GpLMAAGPVMLIAATFS 228
                  ***********.77***********9997 PP



Or compare NP_566232.1 to CDD or PaperBLAST