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Align SwissProt::A1L4X7 to PF03479 (DUF296)

SwissProt::A1L4X7 has 411 amino acids

Query:       DUF296  [M=107]
Accession:   PF03479.15
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    7.3e-30   89.8   0.1    1.6e-29   88.7   0.1    1.5  1  SwissProt::A1L4X7  


Domain annotation for each sequence (and alignments):
>> SwissProt::A1L4X7  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.1   1.6e-29   1.6e-29       1     106 [.     172     284 ..     172     284 .. 0.92

  Alignments for each domain:
  == domain 1  score: 88.7 bits;  conditional E-value: 1.6e-29
                        TEEEEEE-TTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEECTTT......EE-S-EEEEEEEEEEEE.......TTEEEEEEEEETT CS
             DUF296   1 rphvlrlepGediveaieefarkrgiraacvlsaiGavsnvtrladgee......kllgrfeilslsGtilp.......dglHlhvslaged 79 
                        +ph+++++pGed+v++i+ fa++   +++cvlsa+G++sn++  + +++       ++g++eilslsG++++       +g  l+vsl+ +d
  SwissProt::A1L4X7 172 TPHIVNIAPGEDVVQKIMMFANQS-KHELCVLSASGTISNAS--LRQPApsggnlPYEGQYEILSLSGSYIRteqggksGG--LSVSLSASD 258
                        59**********************.*****************..44444566888889**************999998877..********* PP

                        SEEEEEEEEEE.EEEEEEEEEEEEE-C CS
             DUF296  80 gqvvgGhlaegplvaattvevvvaefe 106
                        gq++gG + +  l+aa++v+v++++f+
  SwissProt::A1L4X7 259 GQIIGGAIGSH-LTAAGPVQVILGTFQ 284
                        *********66.************995 PP



Or compare SwissProt::A1L4X7 to CDD or PaperBLAST