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Align SwissProt::O80834 to PF03479 (DUF296)

SwissProt::O80834 has 348 amino acids

Query:       DUF296  [M=107]
Accession:   PF03479.15
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    5.3e-30   90.3   0.3    8.7e-30   89.6   0.3    1.3  1  SwissProt::O80834  


Domain annotation for each sequence (and alignments):
>> SwissProt::O80834  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.3   8.7e-30   8.7e-30       1     105 [.     163     277 ..     163     278 .. 0.93

  Alignments for each domain:
  == domain 1  score: 89.6 bits;  conditional E-value: 8.7e-30
                        TEEEEEE-TTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEECTTT.....EE-S-EEEEEEEEEEEE..........TTEEEEEEEEE CS
             DUF296   1 rphvlrlepGediveaieefarkrgiraacvlsaiGavsnvtrladgee.....kllgrfeilslsGtilp..........dglHlhvslag 77 
                        +phv+ ++ Gedi++++++f+++   ra+cvlsa+Gavs +t l++ ++     k++grfeil+ls +++           +   l+vsla+
  SwissProt::O80834 163 TPHVIAVSIGEDIASKVIAFSQQG-PRAICVLSASGAVSTAT-LIQPSAspgaiKYEGRFEILALSTSYIVatdgsfrnrtG--NLSVSLAS 250
                        59**********************.*****************.77776688999999**************99888887755..5******* PP

                        TTSEEEEEEEEEE.EEEEEEEEEEEEE- CS
             DUF296  78 edgqvvgGhlaegplvaattvevvvaef 105
                        +dg+v+gG +  gpl+aa++v+v+v++f
  SwissProt::O80834 251 PDGRVIGGAIG-GPLIAASPVQVIVGSF 277
                        ***********.**************99 PP



Or compare SwissProt::O80834 to CDD or PaperBLAST