SwissProt::Q940I0 has 439 amino acids
Query: PCC [M=117]
Accession: PF03479.19
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.1e-29 86.8 0.6 1.1e-28 86.1 0.6 1.3 1 SwissProt::Q940I0
Domain annotation for each sequence (and alignments):
>> SwissProt::Q940I0
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 86.1 0.6 1.1e-28 1.1e-28 2 115 .. 223 338 .. 222 340 .. 0.90
Alignments for each domain:
== domain 1 score: 86.1 bits; conditional E-value: 1.1e-28
PCC 2 vfvlrlepGedilesleefareegiraacvlsaiGavsnatlglvdgeekeyeekellgpfEilslsGtisp.........tdgepflHlhv 84
++v+++++Gedi++++ +f ++ +ra+c+lsa+Gav+n+ l+ ++ ++ + + +++g+fEi+slsG++++ t+ l+v
SwissProt::Q940I0 223 PHVIEVKTGEDIATKILAFTNQG-PRAICILSATGAVTNVMLRQANNSNPT-GTVKYEGRFEIISLSGSFLNsesngtvtkTG-----NLSV 307
8**********************.*****************9999977776.5788889*************88777766444.....5*** PP
PCC 85 sladedgqvvgGhlveg.lvaattvevviaef 115
sla+++g++vgG++ g lva + v+v++++f
SwissProt::Q940I0 308 SLAGHEGRIVGGCVD-GmLVAGSQVQVIVGSF 338
**************9.66************99 PP
Or compare SwissProt::Q940I0 to CDD or PaperBLAST