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Align SwissProt::Q940I0 to PF03479 (DUF296)

SwissProt::Q940I0 has 439 amino acids

Query:       DUF296  [M=107]
Accession:   PF03479.15
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    1.7e-32   98.3   1.0    2.6e-32   97.7   1.0    1.3  1  SwissProt::Q940I0  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q940I0  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   1.0   2.6e-32   2.6e-32       1     106 [.     222     339 ..     222     340 .. 0.93

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 2.6e-32
                        TEEEEEE-TTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEE.EEECTTT.....EE-S-EEEEEEEEEEEE..........TTEEEEEEEE CS
             DUF296   1 rphvlrlepGediveaieefarkrgiraacvlsaiGavsnvt.rladgee.....kllgrfeilslsGtilp..........dglHlhvsla 76 
                        +phv+++++Gedi+++i +f ++   ra+c+lsa+Gav+nv  r a++++     k++grfei+slsG++l+          +   l+vsla
  SwissProt::Q940I0 222 TPHVIEVKTGEDIATKILAFTNQG-PRAICILSATGAVTNVMlRQANNSNptgtvKYEGRFEIISLSGSFLNsesngtvtktG--NLSVSLA 310
                        59**********************.*****************8778777799999999**************88877777644..5****** PP

                        ETTSEEEEEEEEEE.EEEEEEEEEEEEE-C CS
             DUF296  77 gedgqvvgGhlaegplvaattvevvvaefe 106
                        g++g++vgG++  g+lva ++v+v+v++f+
  SwissProt::Q940I0 311 GHEGRIVGGCVD-GMLVAGSQVQVIVGSFV 339
                        *99********9.99*************96 PP



Or compare SwissProt::Q940I0 to CDD or PaperBLAST