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Align SwissProt::Q9FIR1 to PF03479 (DUF296)

SwissProt::Q9FIR1 has 386 amino acids

Query:       DUF296  [M=107]
Accession:   PF03479.15
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    5.3e-30   90.3   2.9    7.7e-30   89.8   2.9    1.2  1  SwissProt::Q9FIR1  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q9FIR1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   2.9   7.7e-30   7.7e-30       1     106 [.     181     296 ..     181     297 .. 0.92

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 7.7e-30
                        TEEEEEE-TTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEE.EEECTTT...EE-S-EEEEEEEEEEEE..........TTEEEEEEEEET CS
             DUF296   1 rphvlrlepGediveaieefarkrgiraacvlsaiGavsnvt.rladgee...kllgrfeilslsGtilp..........dglHlhvslage 78 
                        +phv+++++Gedi++++++f+ +   r +c+lsa+Gavs+v  r a++++   +++grfei++lsG++l+          +   l+v+lag+
  SwissProt::Q9FIR1 181 TPHVIEVNTGEDIASKVMAFSDQG-SRTICILSASGAVSRVMlRQASHSSgivTYEGRFEIITLSGSVLNyevngstnrsG--NLSVALAGP 269
                        59**********************.*****************75555555899999*****************98888754..5******** PP

                        TSEEEEEEEEEE.EEEEEEEEEEEEE-C CS
             DUF296  79 dgqvvgGhlaegplvaattvevvvaefe 106
                        dg +vgG ++ g+lvaat+v+v+v++f+
  SwissProt::Q9FIR1 270 DGGIVGGSVV-GNLVAATQVQVIVGSFV 296
                        **********.99*************96 PP



Or compare SwissProt::Q9FIR1 to CDD or PaperBLAST