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Align SwissProt::Q9LVB0 to PF03479 (DUF296)

SwissProt::Q9LVB0 has 404 amino acids

Query:       DUF296  [M=107]
Accession:   PF03479.15
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    5.8e-30   90.2   0.5    1.1e-29   89.3   0.5    1.4  1  SwissProt::Q9LVB0  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q9LVB0  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.5   1.1e-29   1.1e-29       2     105 ..     162     275 ..     161     276 .. 0.92

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 1.1e-29
                        EEEEEE-TTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEE.EEECTTT......EE-S-EEEEEEEEEEEE..........TTEEEEEEEE CS
             DUF296   2 phvlrlepGediveaieefarkrgiraacvlsaiGavsnvt.rladgee......kllgrfeilslsGtilp..........dglHlhvsla 76 
                        +h ++++ Ged+  +++ ++++   ra+c+lsa+G++snvt +   +++      +++grfeilslsG+++p          +g  +++sla
  SwissProt::Q9LVB0 162 THQFTVNGGEDVTMKVMPYSQQG-SRAICILSATGSISNVTlG---QPTnaggtlTYEGRFEILSLSGSFMPtenggtkgraGG--MSISLA 247
                        7999*******************.*****************42...333366888999****************9999998888..****** PP

                        ETTSEEEEEEEEEE.EEEEEEEEEEEEE- CS
             DUF296  77 gedgqvvgGhlaegplvaattvevvvaef 105
                        g++g+++gG la g+l+aa++v+vv+++f
  SwissProt::Q9LVB0 248 GPNGNIFGGGLA-GMLIAAGPVQVVMGSF 275
                        ************.99************98 PP



Or compare SwissProt::Q9LVB0 to CDD or PaperBLAST