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Align SwissProt::Q9SZ70 to PF03479 (DUF296)

SwissProt::Q9SZ70 has 339 amino acids

Query:       DUF296  [M=107]
Accession:   PF03479.15
Description: Plants and Prokaryotes Conserved (PCC) domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    9.1e-34  102.4   0.1    1.3e-33  101.8   0.1    1.3  1  SwissProt::Q9SZ70  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q9SZ70  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.8   0.1   1.3e-33   1.3e-33       1     107 []     146     260 ..     146     260 .. 0.92

  Alignments for each domain:
  == domain 1  score: 101.8 bits;  conditional E-value: 1.3e-33
                        TEEEEEE-TTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEECTTT.......EE-S-EEEEEEEEEEEE.......TTEEEEEEEEET CS
             DUF296   1 rphvlrlepGediveaieefarkrgiraacvlsaiGavsnvtrladgee.......kllgrfeilslsGtilp.......dglHlhvslage 78 
                        r+hv+++ +G+div+++++far+r +r++cv+s++G+v+nvt  + ++        +l grfeilslsG++lp       +g  l+v+lag+
  SwissProt::Q9SZ70 146 RTHVMEIGDGCDIVDCMATFARRR-QRGVCVMSGTGSVTNVT--IRQPGsppgsvvSLHGRFEILSLSGSFLPppappaaTG--LSVYLAGG 232
                        79**********************.*****************..333334668888778**************999999888..******** PP

                        TSEEEEEEEEEE.EEEEEEEEEEEEE-CS CS
             DUF296  79 dgqvvgGhlaegplvaattvevvvaefeg 107
                        +gqvvgG ++ gpl  +++v v++a+f++
  SwissProt::Q9SZ70 233 QGQVVGGSVV-GPLLCSGPVVVMAASFSN 260
                        **********.***************985 PP



Or compare SwissProt::Q9SZ70 to CDD or PaperBLAST